Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02938 ATGCAGAGTCAACTTGTGTGTAATGGTTGTAGGAACATGCTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAATACAATTTCCCCGGTTCCTCCGCCCGGGATGGATATGTCTCAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGTGGAGCTACAAGTGTTAGATGTTCTTGTTGTCACACTGTAAACCTTGCTCCAGTATCTAATCAAGTCGCCCATGTCCCCTGCGCTAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATATTACTAATATCAATAATATGTCGAATGGAAGGGTTCAAGTTCCTGCTAATAGACCTCAGGGGACAACCAACTTGGGAACATTACCTTCTACTTCAACAAGCCAAACTGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTCGGCGTTACAACAGATAAGAAATAA 516 0.4341 MQSQLVCNGCRNMLLYPRGATNVCCALCNTISPVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCANCRTTLMYPYGAPSVKCAVCHYITNINNMSNGRVQVPANRPQGTTNLGTLPSTSTSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02938 171 Pfam LSD1 zinc finger 7 31 IPR005735 -
Vifa6g02938 171 Pfam LSD1 zinc finger 46 70 IPR005735 -
Vifa6g02938 171 Pfam LSD1 zinc finger 84 108 IPR005735 -
Vifa6g02938 171 PANTHER PROTEIN LSD1 2 170 IPR040319 -
Vifa6g02938 171 NCBIfam zinc finger domain, LSD1 subclass 4 32 IPR005735 -
Vifa6g02938 171 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Vifa6g02938 171 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02938 Vifa-Chr6 972859538 972862572 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa6g02938 zf-LSD1 9.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02938 - K12191 gmx:100776394 305.449