Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02934 ATGAAACAGTTCAATTTGGATGCAGAGTTTCACGCCAAAGAGGATAATCCTTTTCGGCGCGAACCGAAAATGGAAAATACACTTGAATCTTCGAGTAGTCCACAATATAAAAAGATATCGTCGAAATGGGATCCAGTTGAAGCGTGTCGGCCGATAATCGGTGAAGCACCTGTGTTTTATCCAACTTTTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATACGTCCCATGGCGGAACTGTATGGCATATGTAGAATCGTCCCTCCGGCTTGTTGGACTCCACCATGTCCGCTTAACGAGAGAGAGATATGGGAAAATGCTAAGTTTCCAACTCGCATTCAGCAAGTTGATTTGCTTCAGAACCGGGAGCCGATGAAGAAGAAAAGTAGGGGAAAGAAACGAAAACGTAGAAGGCAGTCAAGGATGGGAACATGTAGTAGGAGAACTGGAAATTCATGTTCCGAAGCTAATGCCACTTCTGAATCGGACGATACGTTTGGGTTCCAATCAGGGCCAGATTTCACACTTAAAGAATTTCAGCAATATGGAAATTCTTTTAAAGATTGCTACTTTGGGTTGATCAATGCGAAAGATGGTAGAGGCGGTGATAATATTCACCACGAGAGACGTGATCCGTCTGTGGAGGAAATTGAAGGTGAATACTGGCGAATAATCGAGCAACCAACGGATGAGGTCGAGGTGTATTACGGAGCTGACTTGGAAACCGGAGCACTTGGAAGCGGTTTTCCTAAGACATCGTTGTCTACTAAAAGTGATTCAGATTTGTATGCTATGTCTGGCTGGAATCTTAATAACTTTGCACGACTTCCAGGTTCTGCTTTGTGTTTTGAAGGAAGTGACATCTCAGGAGTTCTAGTGCCATGGTTGTATGTTGGAATGTGCTTTTCGACATTCTGCTGGCATGTTGAAGATCATCACCTCTATTCGCTTAATTATCTGCACTGGGGTGATCCGAAAGTATGGTATGGCGTACCTGGGAGCCATGCATCGGCCTTGGAAGATGCGATGAGGAAGCACTTGCCTGATTTGTTTGAAGAGAATCCAAATCTACTCAATGAGTTGGTGACTCAATTCTCTCCTTCGATACTTAAGTCCGAGGGGATTCCTGTGTTTCGAGCTGTCCAACATTCTGGGGAATTTGTTATCACCTTTCCAAGGGCTTACCACGGTGGCTTCAGCTGTGGCTTCAACTGTGCGGAAGCTGTGAATGCGGCTCCGTATGATTGGTTTATGCATGGTCAGAATGCTGTCGAGATTTATAGTCTGCAATGCCGTAAGACATCATTGTCCCATGATAAATTGTTGTTTGGATCTGCTAAGGAAGCTGTGCATGCCCTTTCGAAGACTACTCTTGACGGAAAAGAAAATCTTCAATATTTAAAATGGAGAAATGCTTGTGGAGAAGACGGAGTTCTTACCAATGCAGTTAAGACAAGGATAATGATGGAAAAAGAGAGGCGGGACTGGCTTCCGTCACATTTAAAGATGCTGAAGATGGACAATGACTTCGATTCGGTTGAGGAAAGGGAATGTTTCTCTTGCTTCTATGATTTGCACCTATCCGCCGTTGGTTGCAAGTGCTCTCCTGACAGCTATTCTTGTCTTAAACACTTCAACTTGTTTTGCTCGTGTGAAATGAATAACAGATTCGTTCTGGTTCGTTATACTATGAATGAGCTTAGTACGTTGGTTGAAGCGTTAGAAGGAGAGCCACACGCAATAGAAGCATGGGCGACTGGGAAAATCGGAACAGTTTCTGCTAGTGTTGAGGATGCTTGCATGCGAGAACAAGATATGGAGAGAATCATACGCAAAACCAATAATTTCGAAGAAGGGAAAAGCTCAATTTCTTGTGCAGGAATTATTAATGAGAAGCCGAATTCGAATGTTCCTAGCAGTCCTTACAGTCATATTTCGTCCGAGTTGGTCCATTTAGAGTCTCATCGTGTAAATTTTAGTACACCATATGCGGACACGAATGGCGTTAAGGACAATATGAGTGATACGAAGTTGATTATGGACAATGAAGTTAAGAAGAATAAGGGAAGTTCTTTTTATTTGAATATTGGTGATATATCTCGTAAATCGGAAAATTCAATGCTAATTATAGCTGATAGCCATCGCAATAAGTGTGTTCCATATGCGGAAATAGAGGACACAAAGGAGCGAGACAACATGGAACTTGGTGCTCGTGATATTTATGACTTGGAAAAAGAACCTTCATCATGTCGAACCAGTGTTCGAAATTCTGGTACACTCGATGCTTGTAAACTGTTTGGGGTTGACCTGCAAATACGTTCAGATTCAGGACAGAAACTCAATAGCACGTTCGAAGCGGGAAATCTAGACACCTCCAATTCAAGTATATCTTTGATTAACCAAAGCTCATCAATGCAAAAGTTTAACATTTCTGTCGAGCTCGTAAATTTGGGATCTGTTCTCTATAGAAGGCATTGGTCCAGTAAGCAAGCAATATATCCAAAAGGATTCAAGAGCCGTGTTAAGTTCCTTAGCATTCTTGATCCCGCAAGAATTTGTACCTATGTTTCGGAAGTCATTGATTCTGGAATTCTCGGGCCTTTTTTCAGGGTTTCCTTGGAAGAACATCCAAACGAGGTTTTCACAAACACCTCGGCCGATAAATGCTGGGAAACAGTTATCGACAGGCTAAACTATGAAATAAATAAGCGCAAGATTCTCGGTGAACAAGAAGTCCCTCCCTTGGAACTACTCCACAGCATCAATGGTCATAAAATGTTTGGATTCCTTTCGCCATTCATTATTCAGTCCATTGAAGCTCAAGATTCGAGTCATAAATGTGTAGAGTACTGGAATCACAAACAAGTTAGTTTCGGATCTTCTGGCAAGGTCACTGATGATTTCAAGTTAACTTGCGGCTCAAGTAACAGTTCTCTAGATGACTTCAAGACCAAGCTATTCGGCGTTGATTTGATAAAGCAGGAGGAGGATGACATAGAAGAAAGTTCAGATTCATTTGAAGAGATGAAACCGATTTTAGAAGGACTCTTAAAAAAGGCGAGACCCGATGAGTTAAGAGCAATGCGCAAGTTATTCAGCTCTGATGCACAGATGACTCAGTGGAGACCGACATTGATGACGGTGATAGAGGAAATCGAGAAAGATTCTCAATAA 3180 0.422 MKQFNLDAEFHAKEDNPFRREPKMENTLESSSSPQYKKISSKWDPVEACRPIIGEAPVFYPTFEEFEDTLGYIAKIRPMAELYGICRIVPPACWTPPCPLNEREIWENAKFPTRIQQVDLLQNREPMKKKSRGKKRKRRRQSRMGTCSRRTGNSCSEANATSESDDTFGFQSGPDFTLKEFQQYGNSFKDCYFGLINAKDGRGGDNIHHERRDPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKTSLSTKSDSDLYAMSGWNLNNFARLPGSALCFEGSDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASALEDAMRKHLPDLFEENPNLLNELVTQFSPSILKSEGIPVFRAVQHSGEFVITFPRAYHGGFSCGFNCAEAVNAAPYDWFMHGQNAVEIYSLQCRKTSLSHDKLLFGSAKEAVHALSKTTLDGKENLQYLKWRNACGEDGVLTNAVKTRIMMEKERRDWLPSHLKMLKMDNDFDSVEERECFSCFYDLHLSAVGCKCSPDSYSCLKHFNLFCSCEMNNRFVLVRYTMNELSTLVEALEGEPHAIEAWATGKIGTVSASVEDACMREQDMERIIRKTNNFEEGKSSISCAGIINEKPNSNVPSSPYSHISSELVHLESHRVNFSTPYADTNGVKDNMSDTKLIMDNEVKKNKGSSFYLNIGDISRKSENSMLIIADSHRNKCVPYAEIEDTKERDNMELGARDIYDLEKEPSSCRTSVRNSGTLDACKLFGVDLQIRSDSGQKLNSTFEAGNLDTSNSSISLINQSSSMQKFNISVELVNLGSVLYRRHWSSKQAIYPKGFKSRVKFLSILDPARICTYVSEVIDSGILGPFFRVSLEEHPNEVFTNTSADKCWETVIDRLNYEINKRKILGEQEVPPLELLHSINGHKMFGFLSPFIIQSIEAQDSSHKCVEYWNHKQVSFGSSGKVTDDFKLTCGSSNSSLDDFKTKLFGVDLIKQEEDDIEESSDSFEEMKPILEGLLKKARPDELRAMRKLFSSDAQMTQWRPTLMTVIEEIEKDSQ 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02934 1059 Gene3D - 811 950 - -
Vifa6g02934 1059 SMART JmjN_1 55 96 IPR003349 -
Vifa6g02934 1059 Gene3D Cupin 41 414 - -
Vifa6g02934 1059 Pfam jmjN domain 57 90 IPR003349 -
Vifa6g02934 1059 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vifa6g02934 1059 SMART fyrn_3 820 864 IPR003888 GO:0005634
Vifa6g02934 1059 MobiDBLite consensus disorder prediction 1 32 - -
Vifa6g02934 1059 SMART fyrc_3 870 966 IPR003889 GO:0005634
Vifa6g02934 1059 MobiDBLite consensus disorder prediction 146 168 - -
Vifa6g02934 1059 Pfam F/Y-rich N-terminus 813 861 IPR003888 GO:0005634
Vifa6g02934 1059 ProSiteProfiles FYR domain FYRC motif profile. 866 956 IPR003889 GO:0005634
Vifa6g02934 1059 SMART cupin_9 267 430 IPR003347 -
Vifa6g02934 1059 MobiDBLite consensus disorder prediction 1 26 - -
Vifa6g02934 1059 FunFam Putative lysine-specific demethylase JMJ16 812 950 - -
Vifa6g02934 1059 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Vifa6g02934 1059 SUPERFAMILY Clavaminate synthase-like 177 449 - -
Vifa6g02934 1059 Pfam F/Y rich C-terminus 868 955 IPR003889 GO:0005634
Vifa6g02934 1059 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 841 - -
Vifa6g02934 1059 ProSiteProfiles FYR domain FYRN motif profile. 806 864 IPR003888 GO:0005634
Vifa6g02934 1059 Pfam JmjC domain, hydroxylase 297 412 IPR003347 -
Vifa6g02934 1059 MobiDBLite consensus disorder prediction 128 145 - -
Vifa6g02934 1059 ProSiteProfiles JmjC domain profile. 267 430 IPR003347 -
Vifa6g02934 1059 MobiDBLite consensus disorder prediction 121 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02934 Vifa-Chr6 972449855 972454712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02934 805 994 JUMONJI Transcription Factor Family AT1G30810 47.895 2.26e-46 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa6g02934 JmjC 5.1e-44 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02934 K11446 - gmx:100784581 1475.69