Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02898 ATGGAGATGATTAAGCTCATAGTTTTATCAACAGTTTTGGCACTTTTTGTCCTCTTTTTCCATTTCATCACAAGAATTATCAAATTCAGAAAGCTGAATCTTCCTAAAGGAACCTTAGGATTACCTATTATTGGAGAAACCTTAGAGTTTTTCAAAGCAAATCTTGAGGGGAAACAAATAAGGTTCATACAAGAGAGAATGAAGAAATATGACACAAGGGTTTTCAAGACATCAATGTTGGGAGAGAATATTGCTGTGTTTTGTGGAACAGCTGGGAACAAATACTTATTTAGCAATGAAAACAAGAATGTTCAACTCTGGTGGCCAAGTTCAGTTAAGAAGCTGTTAAGGTTGTCTCTTGTTAATAAAATTGGTGATGAAGCAAAGATAACTAGAAGGTTGCTCATGAGTTTTCTTAATCCAGAAACACTCAGAAACTACCTGTCAAAAATGGATAGGATTGCTCAGCATCATATCAACACACATTGGAAAGGGAATGAGCAGGTTGTTGTCTATCCAATAATACAGTTATACACGTTTGAATTGGCTTGTTGCTTATTCTTAAGCATGGAAGATGGTATCCAATTATCAAACCTTTCATCATATTTTGAAGAATTTCTCAAAGGGGTCATTGGCTTCTCCATCAATTTTCCTGGAACAAGGTTTCATAGGGCAATGAAAGCTGCAGATGCAATAAAGAAAGAAATTAAATTGATTATGAAGAAAAGGAAAGTGGATTTAGAAGAAAAGAAAGCTTCACCCACAGAAGACCTTCTATCACACTTACTTGTTACACCTGACACAAGTGGAAGGTTTATGAGTGAAGCGGAGATTCTTGATAACATGTTACTACTTCTTTTCGCCGGCCATGACACTTCCAGATCAGTAATCTCATTGATCATGAAGTATCTTGGAAATTTGCCTGAAGTTTATGAACAAGTGTTGAAAGAACAACTTGATATTAGCCAAGGGAAAGAGGAAGGAGAGTTATTACAATGGGAGGATGTTCAAAAAATGAAATACTCTTGGAATGTTGCATCTGAAGTTTTGAGGCTGTCACCACCCGTCGGCGGCGCTTACAGAAATGCTATGAAGGATTTGACCTATGCTGATTATAACATCCCTATTAATTGGAAGTTGCATTGGAACACTCATACAACACACATGGATCCAACACTGTTTACAGATCCTGAAAAATTTGATGCATCAAGATTTGAAGGAGAAGGACCAATACCTTATTCATATGTTCCATTTGGAGGAGGACCTAGAATGTGTTTGGGACAAGAGTTTGCTCGGCTGGAGATACTTGTGTTTATGCATAATATTGTGAAACGTTTCAAGTGGGATTTAGTTAATCCTGATGAGAAATTCAAGTATGATCCTATGCTAGAACCTGAAAAGGGGCTTCCAATTCAACTTCATCCTTCCCGTTACACATCATAA 1443 0.3701 MEMIKLIVLSTVLALFVLFFHFITRIIKFRKLNLPKGTLGLPIIGETLEFFKANLEGKQIRFIQERMKKYDTRVFKTSMLGENIAVFCGTAGNKYLFSNENKNVQLWWPSSVKKLLRLSLVNKIGDEAKITRRLLMSFLNPETLRNYLSKMDRIAQHHINTHWKGNEQVVVYPIIQLYTFELACCLFLSMEDGIQLSNLSSYFEEFLKGVIGFSINFPGTRFHRAMKAADAIKKEIKLIMKKRKVDLEEKKASPTEDLLSHLLVTPDTSGRFMSEAEILDNMLLLLFAGHDTSRSVISLIMKYLGNLPEVYEQVLKEQLDISQGKEEGELLQWEDVQKMKYSWNVASEVLRLSPPVGGAYRNAMKDLTYADYNIPINWKLHWNTHTTHMDPTLFTDPEKFDASRFEGEGPIPYSYVPFGGGPRMCLGQEFARLEILVFMHNIVKRFKWDLVNPDEKFKYDPMLEPEKGLPIQLHPSRYTS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02898 480 PRINTS E-class P450 group I signature 383 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 PRINTS E-class P450 group I signature 415 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 PRINTS E-class P450 group I signature 277 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 PRINTS E-class P450 group I signature 425 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 418 427 IPR017972 GO:0005506|GO:0016705
Vifa6g02898 480 SUPERFAMILY Cytochrome P450 27 475 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 PRINTS P450 superfamily signature 425 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 PRINTS P450 superfamily signature 416 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 PRINTS P450 superfamily signature 288 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 PANTHER CYTOCHROME P450 26 31 461 - -
Vifa6g02898 480 Pfam Cytochrome P450 35 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 CDD CYP90-like 66 475 - -
Vifa6g02898 480 Gene3D Cytochrome P450 23 476 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g02898 480 FunFam Taxadiene 5-alpha hydroxylase 25 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02898 Vifa-Chr6 961068312 961070348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02898 33 380 Cytochrome P450 AT5G36110 41.311 4.40e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02898 - - gmx:100778750 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02898 6 961068312 961070348 Vifa6g02898 6 961068312 961070348 ECH