Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02892 ATGGGAAATTGTTGGTATAGGGAATCATCAGACTATAGAGTCTCATCCAATGCAAAACCAGAACAAAACCAGGTGGCAACGAAAGAAAGATACGAACATGATGATAGTAAGTTACCATCAAATCCTAAAGAAGTTGAAGATCTTCGACGCGATTCAGCTGCAAATCCACTGATCGCATTCACTTACGATGAACTAAAGATAATAACCGGACATTTTAGACCAGATCGTGTGTTGGGTGGTGGTGGATTTGGAAGTGTTTATAAAGGTTTTATTTCTGAGGAGTTTAGGGAAGGTCTTCCTTCTATTCCTGTAGCTGTTAAGGTTCATGATGGAGACAATAGTCATCAAGGTCACAGAGAATGGCTGGCAGAAGTTATATTTTTGGGGGAATGTTCACATCCAAATTTAGTGAAATTAATTGGATACTGCTGTGAAAATGAACATAGGGTGCTAGTATATGAGTACATGGCCAGGGGAAGTGTGGAAAACAATTTGTTCTCAAAAATTTTGCTTCCTTTGCCATGGTCCATAAGAATGAAGATTGCATTGGGTGCTGCAAAAGGACTTGCATTTCTTCATGAAGCAGAAAAACCTGTCATCTATCGTGATTTCAAAACATCAAATATTTTATTGGATCTGGACTATAATGCAAAACTTTCTGACTTTGGCCTTGCTAAAGATGGACCAGTTGGAGACAAGTCTCATGTTTCTACTAGAGTAATGGGAACATATGGATATGCTGCACCGGAATACATTATGACAGGTCATTTGACTCCTAGAAGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAACTTTTGACTGGAAGAAAATCTTTAGACAAACTAAGACCAGCAAGAGAGCAAAACCTAACAGAATGGGCTCTTCCTTTGCTCAAAGAAAAGAAGAAAGTGTTGAGTATCATAGATCCAAGACTAGAAGGTAATTATCCAATAAAGGGAGCTCATAAGGCTGCAATGCTAGCATATCATTGTTTGAACAAGAATCCAAAAGCAAGGCCTCTAATGAGAGATATTGTTGATTCATTGGAGCCTTTGACAACATATAGTGAGGTCCCTATTGAAAAAACATTTACTATAATCACTGAGGTTGCTGAAACTGATGTTAAAAAGAAAGAGGCCAAAGAAAGAGGTCCCTGTTGA 1164 0.3814 MGNCWYRESSDYRVSSNAKPEQNQVATKERYEHDDSKLPSNPKEVEDLRRDSAANPLIAFTYDELKIITGHFRPDRVLGGGGFGSVYKGFISEEFREGLPSIPVAVKVHDGDNSHQGHREWLAEVIFLGECSHPNLVKLIGYCCENEHRVLVYEYMARGSVENNLFSKILLPLPWSIRMKIALGAAKGLAFLHEAEKPVIYRDFKTSNILLDLDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLTEWALPLLKEKKKVLSIIDPRLEGNYPIKGAHKAAMLAYHCLNKNPKARPLMRDIVDSLEPLTTYSEVPIEKTFTIITEVAETDVKKKEAKERGPC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02892 387 ProSitePatterns Protein kinases ATP-binding region signature. 78 107 IPR017441 GO:0005524
Vifa6g02892 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vifa6g02892 387 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02892 387 FunFam Serine/threonine-protein kinase BIK1 39 155 - -
Vifa6g02892 387 FunFam Probable serine/threonine-protein kinase PBL8 156 369 - -
Vifa6g02892 387 Gene3D Transferase(Phosphotransferase) domain 1 156 373 - -
Vifa6g02892 387 SUPERFAMILY Protein kinase-like (PK-like) 55 360 IPR011009 -
Vifa6g02892 387 Pfam Protein tyrosine and serine/threonine kinase 75 350 IPR001245 GO:0004672|GO:0006468
Vifa6g02892 387 MobiDBLite consensus disorder prediction 25 47 - -
Vifa6g02892 387 MobiDBLite consensus disorder prediction 1 47 - -
Vifa6g02892 387 PANTHER OS01G0588500 PROTEIN-RELATED 32 353 - -
Vifa6g02892 387 MobiDBLite consensus disorder prediction 9 24 - -
Vifa6g02892 387 Gene3D Phosphorylase Kinase; domain 1 33 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02892 Vifa-Chr6 959496486 959504761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02892 39 355 Glycoside Hydrolase AT3G07070 50.459 1.00e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa6g02892 PK_Tyr_Ser-Thr 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02892 - - psat:127105028 739.184