LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g02888	ATGTCGATGAATAGACGTTTGGAATTCGGGAGGCCTGTATCAAGTAAAAGAAGATTGAAGGATTTATTGGTTCAAAAAGATAATCGTTTTTGTGCTGATTGTGGCTCTCCGGATCCTAAATGGGCGTCAGCCAATATCGGAGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGTACTCATATATCAAGGATTTTGTCTGTGACATTGGATGAATGGTCGGGTGATGAAATAGATGCAATGATGGAAGTTGGAGGAAATGCTTCTGCAAATTCGATCTATGAGGCTTATATTCCGGAAGGATACACAAAGCCTGGACCCGATGCCAGTCATGAGGGACGTGAAAAATTCATCAGGGCAAAGTATGAGCGTCAAGAATTTTTGAAACATAGTCTGCGCATTGTATCAAACAAAAGCAAAAGCAATCGTCAATCAAGTTTCGCCAAAAAGATTATGGATAGCTTTCGAACTACTAGTGGTTCAAAGAATATGGAAGGAATGGTAGAATTCATTGGAATGTTGAAAGTGAAAGTGGTCAAAGGCACAAATTTAGCAATCAGAGATATGATGACAAGTGATCCGTACGTTGTTTTAAAGCTTGGCCAACAGACTGTTCAGACAGCCATAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGTTATCTGTTCCTGAGCAATATGGAACGATAAGTTTGAAGGTATTTGATCATGACTTGTTTTCGGCGGATGATATAATGGGAGAAGCAGAGATTGATCTTCAACCACTGATAACATCTGCAATGGCATTTGGAGATGCTGGAATGTTTGATGATATGCAAATAGGAAAATGGCTGAAATCAAATGACAATGCACTTGTAGAAGATAGCATAGTCAATATCATTGACGGTAAGGTTAAACAAGATATGTTAATCAAGCTTCAGAATGTTGAATGTGGAGAATTAAACTTAGAACTTGAGTGGTTATCTCTTAATCATTAG	996	0.3805	MSMNRRLEFGRPVSSKRRLKDLLVQKDNRFCADCGSPDPKWASANIGVFVCLKCCGVHRSLGTHISRILSVTLDEWSGDEIDAMMEVGGNASANSIYEAYIPEGYTKPGPDASHEGREKFIRAKYERQEFLKHSLRIVSNKSKSNRQSSFAKKIMDSFRTTSGSKNMEGMVEFIGMLKVKVVKGTNLAIRDMMTSDPYVVLKLGQQTVQTAIIKSNLNPVWNEELMLSVPEQYGTISLKVFDHDLFSADDIMGEAEIDLQPLITSAMAFGDAGMFDDMQIGKWLKSNDNALVEDSIVNIIDGKVKQDMLIKLQNVECGELNLELEWLSLNH	331

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g02888	331	CDD	C2_ArfGAP	174	318	-	-
	Vifa6g02888	331	SUPERFAMILY	ArfGap/RecO-like zinc finger	16	132	IPR037278	-
	Vifa6g02888	331	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	11	330	IPR044518	GO:0005096\|GO:0005543
	Vifa6g02888	331	Pfam	C2 domain	176	265	IPR000008	-
	Vifa6g02888	331	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	16	145	IPR001164	GO:0005096
	Vifa6g02888	331	PRINTS	HIV Rev interacting protein signature	28	47	IPR001164	GO:0005096
	Vifa6g02888	331	PRINTS	HIV Rev interacting protein signature	47	64	IPR001164	GO:0005096
	Vifa6g02888	331	PRINTS	HIV Rev interacting protein signature	68	89	IPR001164	GO:0005096
	Vifa6g02888	331	ProSiteProfiles	C2 domain profile.	157	272	IPR000008	-
	Vifa6g02888	331	Gene3D	C2 domain	174	331	IPR035892	-
	Vifa6g02888	331	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	171	269	IPR035892	-
	Vifa6g02888	331	FunFam	Arf-GAP with dual PH domain-containing protein 1	11	139	-	-
	Vifa6g02888	331	SMART	arf_gap_3	17	138	IPR001164	GO:0005096
	Vifa6g02888	331	Gene3D	Arf GTPase activating protein	8	139	IPR038508	-
	Vifa6g02888	331	CDD	ArfGap	19	125	-	-
	Vifa6g02888	331	Pfam	Putative GTPase activating protein for Arf	17	132	IPR001164	GO:0005096
	Vifa6g02888	331	SMART	C2_3c	176	271	IPR000008	-
	Vifa6g02888	331	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	173	331	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g02888	Vifa-Chr6	958211897	958214101	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g02888	9	331	C2H2 Transcription Factor Family	AT4G21160	72.424	0.0	513

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g02888	K12486		-	gmx:100777084	528.094