Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02860 ATGCCTCGTAAAGTTAACTATGGAATCGATTACTACGACGATGACTATGAGGACTATGATGACTATGATTATGATGTTGAAGCTGAAAACTATGGAGCAGGAGAAGGACCTGTTGCAAAGCAAGAGACCATTAGGCCTGGAGTTTGGCAATGCCCCATTTGCACCTATGACAACGATGAGAGTATGACTTCGTGTGATATTTGTGGCGTTGTACGTCATCCCTTGGTTTACAATGGACCTTCCAACAGTAACAAAACAGTTGAAGATATAAACAAAATTCCTGGAGCATCCAAGCTGGCCAGGTCTATTTTTCAATCATTACCACACCAGAGTCCCAAAGAGGTTGTATTATTTCCAACGCAAGGTGTTGGTTTTTGGACAGATAGCAGTAACATCTACAAGCTTGAGAATGTCCATGGAGAATTTCATGAAATTCATAAGACTTTTAATACTCAAAGCCATCCATCTTTAAATATAGATCCTTTCAAGTTTGATGTTCCATCTCCAGATGATGTGGTTCATACTGGCCTACATTCTTCAAAAGTGGGTTTGAAAGACAAAGTTAAAAACGCTAAAGATTCACAGTTTTCACAAAACAGCAGAGAGAAGAGTGGACTTTCTGTAGAATTCAATACTGAAAGTGCAGACAACTCATCATCCTTAATGCAAACGAGCAAGCAGGGTAGTGTGGCTCAAAACAAGCTTTCCAAAAATGTAGAAATTGATATGAAAACATTTGGTGAAACTTTAAACAGTTTATCATTTTTGCCAAAGGACAAAGGAGATGATACGAAAAAAATAGATTCTTCAAAAAATGGTACAAATGGTATCCAATCAAGCAAAGAATACTTCAGTCGTTTGTCTGCACTGCCCAAAGTTGAAGAAAGTGATAAGCTTAGTTTGTCTTCTAACAATGATGGAAATTCTGAAAGTGCTTCCAGCAGTTTTAACCACACAGTTCTTGATGTAAAATCTGGAAATTTTGATAAAACTACTTCTAAGGCACCTCATCAACAAGTTTCTTACACGCCGGAAAAGTGGATGCTTCCTCAACATTCTGAAGATACATTGACTCAGTTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGAAAATCAACACTATCCGGCAGGTTATTACACCTATTGGGACGAATTTCCAAGAAAGAAATGCACAAGAATGAAAAGGAGGCCAAGTTACTGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAACGGGGGATAACCATGACAGTGGCTGTGGCATATTTCGACACTAAGAAATATCATGTTGTTGTGCTCGACTCTCCTGGTCATAAAGACTTCATCCCAAACATGATTTCTGGCGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCTGGTATGGATGGTAGCAAAGGGCAAACAAAAGAGCATGCACAGCTTATTAGAAGTTTTGGTGTAGACCATGTTATAGTTGCAGTAAATAAGATGGATGCTGTGGCATACTCCAAAGACCGATTTGATTTTATAAGACATCAGCTGGGAATTTTTCTCCGCTCATGTGGGTTCAAAGATTCTTCTCTCTTGTGGATTCCCCTGAGTGCCATGGAAAATCAAAATCTGGTAGCATCCCCTTCTGACGCTCATTTCAAAAACTGGTATACTGGACCTTATCTGTTAGATGCAGTTGACTCACTACAACCTCCTACTAGAGAATTCGCTAAACCTCTGCTAATGCCAATATGTGATGTCATCAAATCAACTGCACAAGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGAAGTGGAACAAAGGTACTAGTTATGCCTTCAGATGTTGTTGGAACAGTACGCACATTGGAGCGTGACTCTAATGTTTGCTCTGTTGCAAGAGCTGGAGATAACGTAGCTGTAACGTTGCATGGTGTTGATGGAAGTCATGTATTGGCTGGAGGTGTATTATGCCATCCCGACTTTCCTGTTGCAGTTGCAAAGCATTTGGAGTTGAAATTGCTTGTCTTGGATGGTGCAAGTCCCATATTGGTTGGTGCTCAGTTAGAGTTTCATATTCATCATGCAAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAATACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGCTGTCTCACATCAAAACAAAGTGCAGTAATTGAGGTGATTTTGAATGAGCCAGTCTGCGTGGTAGAGTTTTCTAGATGTAAAGCTCTTGGAAGAGTATCCCTTAGATCATTAGGAAGAACAATTGCTGTTGGACTTGTGACAAGAATAATCGAAGAACAAGATTAG 2367 0.403 MPRKVNYGIDYYDDDYEDYDDYDYDVEAENYGAGEGPVAKQETIRPGVWQCPICTYDNDESMTSCDICGVVRHPLVYNGPSNSNKTVEDINKIPGASKLARSIFQSLPHQSPKEVVLFPTQGVGFWTDSSNIYKLENVHGEFHEIHKTFNTQSHPSLNIDPFKFDVPSPDDVVHTGLHSSKVGLKDKVKNAKDSQFSQNSREKSGLSVEFNTESADNSSSLMQTSKQGSVAQNKLSKNVEIDMKTFGETLNSLSFLPKDKGDDTKKIDSSKNGTNGIQSSKEYFSRLSALPKVEESDKLSLSSNNDGNSESASSSFNHTVLDVKSGNFDKTTSKAPHQQVSYTPEKWMLPQHSEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKNEKEAKLLGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASLGAFEAGMDGSKGQTKEHAQLIRSFGVDHVIVAVNKMDAVAYSKDRFDFIRHQLGIFLRSCGFKDSSLLWIPLSAMENQNLVASPSDAHFKNWYTGPYLLDAVDSLQPPTREFAKPLLMPICDVIKSTAQGQVSACGKLEAGALRSGTKVLVMPSDVVGTVRTLERDSNVCSVARAGDNVAVTLHGVDGSHVLAGGVLCHPDFPVAVAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSRILSILDPKTGKVTKKSPRCLTSKQSAVIEVILNEPVCVVEFSRCKALGRVSLRSLGRTIAVGLVTRIIEEQD 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02860 788 CDD HBS1_C_III 675 783 - -
Vifa6g02860 788 Gene3D - 348 581 IPR027417 -
Vifa6g02860 788 Gene3D - 42 99 - -
Vifa6g02860 788 PANTHER TRANSLATION FACTOR 355 783 - -
Vifa6g02860 788 MobiDBLite consensus disorder prediction 189 232 - -
Vifa6g02860 788 Gene3D Translation factors 678 788 - -
Vifa6g02860 788 CDD EF1_alpha 361 580 - -
Vifa6g02860 788 FunFam Elongation factor 1 alpha-like protein 350 581 - -
Vifa6g02860 788 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 680 784 IPR009001 -
Vifa6g02860 788 SUPERFAMILY Translation proteins 579 674 IPR009000 -
Vifa6g02860 788 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vifa6g02860 788 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 357 588 IPR000795 GO:0003924|GO:0005525
Vifa6g02860 788 FunFam Translation elongation factor EF-1 584 674 - -
Vifa6g02860 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 602 IPR027417 -
Vifa6g02860 788 SMART zf_4 47 71 IPR001876 -
Vifa6g02860 788 Pfam Elongation factor Tu GTP binding domain 360 576 IPR000795 GO:0003924|GO:0005525
Vifa6g02860 788 PRINTS GTP-binding elongation factor signature 440 450 IPR000795 GO:0003924|GO:0005525
Vifa6g02860 788 PRINTS GTP-binding elongation factor signature 456 467 IPR000795 GO:0003924|GO:0005525
Vifa6g02860 788 PRINTS GTP-binding elongation factor signature 361 374 IPR000795 GO:0003924|GO:0005525
Vifa6g02860 788 PRINTS GTP-binding elongation factor signature 501 510 IPR000795 GO:0003924|GO:0005525
Vifa6g02860 788 PRINTS GTP-binding elongation factor signature 420 428 IPR000795 GO:0003924|GO:0005525
Vifa6g02860 788 Pfam Elongation factor Tu C-terminal domain 679 783 IPR004160 -
Vifa6g02860 788 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vifa6g02860 788 Gene3D Translation factors 585 674 - -
Vifa6g02860 788 MobiDBLite consensus disorder prediction 193 232 - -
Vifa6g02860 788 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Vifa6g02860 788 MobiDBLite consensus disorder prediction 253 278 - -
Vifa6g02860 788 FunFam elongation factor 1-alpha isoform X4 678 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02860 Vifa-Chr6 954678845 954685995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02860 47 84 Eukaryotic Initiation Factors Gene Family AT5G10630 60.526 3.59e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02860 K14416 - gmx:100801724 1206.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10132 1 1676413809 1676415848 Vifa6g02860 6 954678845 954685995 PCT