Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02858 ATGGGAATCCATGGTTTATTACCGCTACTCAAATCCATAATGCTCCCAATTCACATCAAAGACCTTCACGGCTGCTCTGTCGCCATCGACACCTACTCTTGGCTCCACAAAGGCGCCCTTTCTTGCAGCACTGACCTCTGCAAAGGAATACCCACTTCTAGGCATATTGAGTATTGTATGCATAGAGTGAATTTGCTGCGCCATTATGGTGTTAAGCCTATTCTTGTATTTGATGGAGGTTTTCTACCAATGAAGGTTGAACAAGAGAACAAGCGTGCTAGGGCTAGAAAGGATAATTTTGAACGTGCAGTTGAACACGATTCAAATGGAAATTCTACAGCTGCTTATGAGTGCTACCAGAAAGCTGTTGATATTTCTCCTCTGATTGCGCGAGAGCTAATTCAGGTATTGAAGCAGGAGAATGTCCAGTATATTGTTGCTCCTTATGAGGCAGATGCCCAAATGACATTCTTGGCAATTAGCAAACAGGTTGACGCAGTTATAACTGAAGATTCGGATCTTATACCGTTTGGTTGTCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTCCAGTTTCAGTATTCAATGCTTCAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTTAACAGACAAATGCTTCTTGAGATGTGTATTTTGAGTGGCTGCGATTATCTTCCGTCCTTGCCAGGTATGGGTCTCAAAAAGGCCCATGCAAGCATTAAAAAGTTTAAAAGTTACGACAAGGTTCTTAAGCACTTGAGATACAGTGGTATTTCTATACCTCCCAATTATGAAGAACTTTTTAGGCCCATATCCTTTCAAGATATAGCACAGGGAATAGCTGAAGGGGATCTTGATCCAATTACCAAAACGCCATTTGAGGGAGATAAATTTATTGCCAGATTAGAAATTGTAGGAACTTCTCAATTCAAAACTCTTAACCCTGAAAGGGTGAAGAAAAAGATTGATCTTCCCGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTTTTGCATCTCTTGAAGCAAAAAGGGAATTCAGAGCACCACGGACATCACCTACTACTACTAACCAAAGTACACTGATTTCTTCTTCTGTCAATTCCCTGGAACATCAGACTTTAGAAGCTGTTGCTAGAGAAACTATGAACTCCGGTGCATCGTCAGTTGACTCTGAGAATTTAGGCAGCGGCTCTTCTCCTAATTGCTATATTGAAAACAGTTTTTCCTCCAAAACTTCAGACCTTATAAAATCACCATATCATGCATCTATGGCAGGAGAGAAGAAGGCAAGTCCCGATCATACAATATTGAGACAGCCCAGGAAGCCAATTCATAAACCTTGTCTGGGGTCGCATAAGGAGCAAGAGCTCACGAATCTCCAAGACAAAGTTGAAGGAAACACCAAGGAGGTAAGAAGAAAGGTAATTGTAAGGAGTCCTTACTTTCAGCAGAAGCAAATAGAAAAGAATGCTTGTGATGAGAAACAAGAGCAGCTGTCCTCTGGCATCTTCATTGACGAGAGAAAAAATGGCATATCTGGAGGTGATTTATGTAACAGCCATTTGAAGAACAACGACTTGAAAAGGAAGGGCTCCCCTAATGACAATACTCAAAATGAAAACTTACAGGCCAGGAAAATGCATCCTACTTCATCTACTTATGATAATGGCTGCTCTGATCACAATGTTGATGCGCCATTGAAAGATGATAGTGCTGAAGAAAAATTTGGGACAAACATTTCCCATTTAGGTCATTATTCAAAAATAGCCGAGAAGTCTTTGGAAAGATTTGCTTCTGTAATATCAGCTTTTAAATATACACCCGGCTCTCGTGTCAGTGGTCTACGCGCTCCACTGAAAGATGTTCGGAACTCTCATAACAACAATAGGCCAACATCTGCGGACTTGAACAAATATGCGTATGTGCCAAAACCAACAAAGACTAGAAGAGTAGCTCCTGATATTCGTAAAACTCGTAATACTAGGCCAGCGGCTGCGGACTTGAGCCAATTTGCTTATGTGCCAAAACAGAGACTAGAAGAATAG 2055 0.4088 MGIHGLLPLLKSIMLPIHIKDLHGCSVAIDTYSWLHKGALSCSTDLCKGIPTSRHIEYCMHRVNLLRHYGVKPILVFDGGFLPMKVEQENKRARARKDNFERAVEHDSNGNSTAAYECYQKAVDISPLIARELIQVLKQENVQYIVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLPSLPGMGLKKAHASIKKFKSYDKVLKHLRYSGISIPPNYEELFRPISFQDIAQGIAEGDLDPITKTPFEGDKFIARLEIVGTSQFKTLNPERVKKKIDLPVQKNLLTKYFCFASLEAKREFRAPRTSPTTTNQSTLISSSVNSLEHQTLEAVARETMNSGASSVDSENLGSGSSPNCYIENSFSSKTSDLIKSPYHASMAGEKKASPDHTILRQPRKPIHKPCLGSHKEQELTNLQDKVEGNTKEVRRKVIVRSPYFQQKQIEKNACDEKQEQLSSGIFIDERKNGISGGDLCNSHLKNNDLKRKGSPNDNTQNENLQARKMHPTSSTYDNGCSDHNVDAPLKDDSAEEKFGTNISHLGHYSKIAEKSLERFASVISAFKYTPGSRVSGLRAPLKDVRNSHNNNRPTSADLNKYAYVPKPTKTRRVAPDIRKTRNTRPAAADLSQFAYVPKQRLEE 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02858 684 SMART xpgn3 1 99 IPR006085 GO:0004518
Vifa6g02858 684 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Vifa6g02858 684 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Vifa6g02858 684 MobiDBLite consensus disorder prediction 524 560 - -
Vifa6g02858 684 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Vifa6g02858 684 FunFam Exonuclease 1, putative 1 207 - -
Vifa6g02858 684 Gene3D - 211 273 - -
Vifa6g02858 684 MobiDBLite consensus disorder prediction 424 455 - -
Vifa6g02858 684 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 452 IPR006084 -
Vifa6g02858 684 Gene3D - 1 207 - -
Vifa6g02858 684 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 277 IPR036279 -
Vifa6g02858 684 SMART xpgineu 138 208 IPR006086 GO:0004518
Vifa6g02858 684 MobiDBLite consensus disorder prediction 534 560 - -
Vifa6g02858 684 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Vifa6g02858 684 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Vifa6g02858 684 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Vifa6g02858 684 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Vifa6g02858 684 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vifa6g02858 684 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Vifa6g02858 684 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Vifa6g02858 684 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Vifa6g02858 684 FunFam exonuclease 1 209 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02858 Vifa-Chr6 954254975 954260069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02858 1 267 Core DNA Replication Machinery Family AT5G26680 25.357 4.24e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02858 K10746 - gmx:100798062 776.933