Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02857 ATGCAAGGGAACAATTACATTCCTCCTTTAACACCAAGGTCGAGATTGGAAAGGCTTTTGAGAGAAAGAGAGCTAAGGAAATCAAGCCGGTATACTCAATCGGCCGAGGACGGAAAAGATGGCAACAGAGACTCAGAACAACTTAGTGATGCATTCCTAAGTGAGAATGAAGTCGAAGATGTTGCGGAAACGGTGGCTGTGGAGGACAGGCCTCGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCTGTCTCGGCTGTTAGGGAGGGTGTGGATTCATATCACCTTGAGATCAGTGTTGGTGGCCTTGTCAGTGCACTTTTAGGTGTAAAGGAGTTTGACACAAGATGGATTGGATGGGCTGGTGTGAATGTGCCTGATGAAGTTGGGCAGAAAGCTTTGACTAAAGCTTTAGCTGAAATGCGATGCATTCCGGTGTTTCTTGACGAGGATATAGTTAATGAATACTATAATGGTTATTGCAACAACATACTATGGCCACTATTTCATTACCTTGGACTTCCGCAAGAGGATCGACTAGCTACCACCCGTAGTTTCCAAACTCAATTCGATGCGTATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTGAATAAGCATTATCAGGATGGAGATGTTGTTTGGTGCCATGATTATCACCTAATGTTTCTTCCAAGATGTTTGAAAGAATACAATGACAAAATGAAAGTTGGATGGTTTCTCCATACACCTTTTCCTTCCTCGGAAATACATAGGACTCTGCCATCGAGGTCGTATCTTTTGAGATCTGTACTTGCTGCTGATTTGGTGGGATTCCATACTTACGATTATGCTAGGCATTTTGTAAGTGCTTGTACTCGAATTCTTGGGATAGAAGGTACACCTGAAGGAGTCGAAGATCAAGGGAAGCTAACCCGTGTGGCTGCGTTTCCTATTGGAATTGACTCTGAGAGATTCATTAGAGCCCTTGCGCTTCCTGAAGTCCAGAATCACTTGAAAGAATTGAAAGAAAGGTTTGCAGGCCGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATAAAAGGAATTCCTCAGAAAATCTTGGCTTTTGAGAAGTTCCTAGAAGAGAATGCACATTGGCGTGATAAAGTTGTCTTGCTACAAATTGCTGTGCCTACTAGGACAGATGTCTCTGAATATCAAAAGCTTACAAGCCAGGTGCATGAAATTGTTGGACGCATCAATGGAAGATTTGGAACACTTACTGCTGTCCCGATACACCATCTGGATCGGTCACTTGACTTTCATGCATTATGTGCACTCTATGCAATTACTGATGTAGCACTTGTTACATCATTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCATGTCAAGCTTCCAAGAAGGGGGTTCTCATTCTAAGCGAGTTTGCAGGTGCAGCACAATCTCTTGGTGCTGGTGCTATCTTGGTAAATCCATGGAACATCACAGAAGTTGCTGCTTCTATTGGTTATGCTTTGGATATGCCAGCTGACGAAAGAGAAAAACGGCATCAGTTTAATTTCAAGCATGTAACAACTCACACATCACAAGAATGGGCTGCAACTTTTGTGAGTGAACTGAATGATACCATTGTTGAAGCTCAACTTAGAAAAAGACAAGTTCCTCCGTTACTTCCCAATAAAGTCGCGGTTGATTGTTACTCAAAATCCAATAATCGATTGATTATACTGGGTTTCAATACCACTCTGACTGAACCAGTTGATACTCTTGGAAGGGGTGGTCAGATTAAAGAAATGGAACTAAAAGTACACCCTGATCTGAAGGAGCCTTTAAAGAAGTTATCTGAAGATCCAAAGACAACAATGATAGTTCTAAGTGGGAGTGGTAGAGCTGTCCTGGACAAAAACTTTGGTGAATACAATATGTGGTTGGCAGCAGAAAACGGGATGTTTCTTCGACTTACTTCAAGTGAATGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGTGTAAAGCATGTTTTTGAGTATTTCACTGAAAGAACACCAAGGTCTCATTTTGAGCTTCGCGAAACTTCAATTATATGGAGCTATAAGTATGCAGATGTTGAGTTTGGAAGACTTCAAGCAAGAGATCTGCTTCAGCATCTTTGGACAGGGCCGATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCTGTCGAGGTTCGTGCAGTTGGTGTGTCAAAGGGAGCGGCTATCGATCGTATCCTGGGAGAGATAGTTCATAGTAAAGGCATGAAAGAACCAATTGATTATGTCCTATGCATTGGCCACTTTCTAGCAAAGGATGAAGATGTCTATAAATTTTTTGAGCCAGAGCTCCCTTCTGAATCATCTCCAATGGCAAAAGCTATGCTGTCCAATTACAGGCCATCATCTCTGCCAAGAGCTTCATCCAGCAAAGGTGGATCTAAAGCAACTTACTATAAGAAGCAGCGCTCAATGTCAAATATAGAAAGGAAAGAGATAGAACGCACAAGTAGTGATCCTTGGAGACCAACAAGTCGCGAGAGAACATCATTACACGAGGGTTCTTCAGTTCTTGATCTTAAAGGTGATAACTACTTCTCTTGTGCCGTTGCACGGAAGAGATCAAGCGCACGCTACCTTCTTAAAACCTCTCATGATATTGTCAATCTCTTAAGTGACCTGGCAGATCATTCTTGA 2724 0.4211 MQGNNYIPPLTPRSRLERLLRERELRKSSRYTQSAEDGKDGNRDSEQLSDAFLSENEVEDVAETVAVEDRPRKQRLLVVANRLPVSAVREGVDSYHLEISVGGLVSALLGVKEFDTRWIGWAGVNVPDEVGQKALTKALAEMRCIPVFLDEDIVNEYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQTQFDAYKKANQMFADVVNKHYQDGDVVWCHDYHLMFLPRCLKEYNDKMKVGWFLHTPFPSSEIHRTLPSRSYLLRSVLAADLVGFHTYDYARHFVSACTRILGIEGTPEGVEDQGKLTRVAAFPIGIDSERFIRALALPEVQNHLKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAHWRDKVVLLQIAVPTRTDVSEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAITDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFKHVTTHTSQEWAATFVSELNDTIVEAQLRKRQVPPLLPNKVAVDCYSKSNNRLIILGFNTTLTEPVDTLGRGGQIKEMELKVHPDLKEPLKKLSEDPKTTMIVLSGSGRAVLDKNFGEYNMWLAAENGMFLRLTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSIIWSYKYADVEFGRLQARDLLQHLWTGPISNASLDVVQGGRSVEVRAVGVSKGAAIDRILGEIVHSKGMKEPIDYVLCIGHFLAKDEDVYKFFEPELPSESSPMAKAMLSNYRPSSLPRASSSKGGSKATYYKKQRSMSNIERKEIERTSSDPWRPTSRERTSLHEGSSVLDLKGDNYFSCAVARKRSSARYLLKTSHDIVNLLSDLADHS 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02857 907 Gene3D Glycogen Phosphorylase B; 66 321 - -
Vifa6g02857 907 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 664 744 - -
Vifa6g02857 907 CDD GT20_TPS 75 540 IPR001830 GO:0003824|GO:0005992
Vifa6g02857 907 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 75 540 IPR012766 GO:0003825|GO:0005992
Vifa6g02857 907 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 322 524 - -
Vifa6g02857 907 Pfam Trehalose-phosphatase 597 797 IPR003337 GO:0003824|GO:0005992
Vifa6g02857 907 Gene3D Glycogen Phosphorylase B; 322 524 - -
Vifa6g02857 907 SUPERFAMILY HAD-like 573 760 IPR036412 -
Vifa6g02857 907 MobiDBLite consensus disorder prediction 808 832 - -
Vifa6g02857 907 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 68 904 IPR001830 GO:0003824|GO:0005992
Vifa6g02857 907 Pfam Glycosyltransferase family 20 75 540 IPR001830 GO:0003824|GO:0005992
Vifa6g02857 907 CDD HAD_TPP 573 792 - -
Vifa6g02857 907 MobiDBLite consensus disorder prediction 808 862 - -
Vifa6g02857 907 MobiDBLite consensus disorder prediction 23 46 - -
Vifa6g02857 907 MobiDBLite consensus disorder prediction 833 862 - -
Vifa6g02857 907 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 67 321 - -
Vifa6g02857 907 Gene3D - 598 758 IPR023214 -
Vifa6g02857 907 Gene3D - 664 744 - -
Vifa6g02857 907 FunFam Alpha,alpha-trehalose-phosphate synthase 598 668 - -
Vifa6g02857 907 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 74 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02857 Vifa-Chr6 954249332 954254318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02857 1 905 Trehalose Biosynthesis Gene Families AT1G78580 74.684 0.0 1388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02857 K16055 - gmx:100816642 1530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02857 6 954249332 954254318 Vifa6g02857 6 954249332 954254318 ECH