Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02847 ATGAGTTTTCCAAATGAATCCATGCCAGATTCTCCTCAGAGAAAGATTGGAAGGGGAAAGATTGAGATCAAGAGGATCGAAAACACAACGAATCGCCAAGTTACCTTCTGCAAAAGGAGAAATGGCTTGCTTAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAAGTTGCTCTTATCGTCTTCTCCACTCGTGGCCGTCTCTATGAATATGCAAACAACAGTGTGAAAGCTTCTATTGAGAGGTATAAGAAAGCATGTTCTGATACTTCTGGTGCTAAATCATCTTCTGAGACTAATGCTCAGTATTATCAGCAAGAAGCTGCGAAACTGCGAGTGCAAATCAGTAATTTGCAGAATCATAACAGGCAAATGATGGGTGAAGCTTTGAGCAATATGAATGGTAAGGAACTGAGGAACCTTGAGAGTAAACTAGAAAAAGGAATTAGCCGAATTCGCTCCAAGAAGAATGAAATGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGAGTTGCATAATAGCAATCAGGTTCTTAGAGCAAAGATATCAGAAAATGATCAGAGGAACAACCATAATGTTAATGTGTTGCATGGAGGCACAAACTTTGAATGCAGGACCAGATGTCTCTTCAATTTGTTTGACGTGTTCGCGGTTGAGAAGGACAAAGACTTGGAGTTTCTGGTATTTGAATCTTGGCAATCTTATGATAGTGTATGCGTAAAGAAAATATAA 744 0.3938 MSFPNESMPDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDTSGAKSSSETNAQYYQQEAAKLRVQISNLQNHNRQMMGEALSNMNGKELRNLESKLEKGISRIRSKKNEMLFAEIEYMQKREIELHNSNQVLRAKISENDQRNNHNVNVLHGGTNFECRTRCLFNLFDVFAVEKDKDLEFLVFESWQSYDSVCVKKI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02847 247 CDD MADS_MEF2_like 17 90 IPR033896 GO:0000977|GO:0045944
Vifa6g02847 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Vifa6g02847 247 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Vifa6g02847 247 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Vifa6g02847 247 Pfam K-box region 97 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa6g02847 247 Gene3D - 28 126 IPR036879 GO:0003677|GO:0046983
Vifa6g02847 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 180 - -
Vifa6g02847 247 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Vifa6g02847 247 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Vifa6g02847 247 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Vifa6g02847 247 Coils Coil 139 159 - -
Vifa6g02847 247 Coils Coil 102 129 - -
Vifa6g02847 247 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Vifa6g02847 247 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Vifa6g02847 247 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Vifa6g02847 247 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02847 Vifa-Chr6 951489632 951493018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02847 14 207 MADS-box Gene Family AT2G42830 70.918 1.51e-96 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa6g02847 K-box 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02847 K09264 - twl:120014444 325.094