Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02844 ATGCTATCTAAGATCTTCTTCACTCTCTCAATCATAGCATTTACTTGTTTCCTTCATTATGCACAATCTAAACTTCCACAGCAAGAGCTTGATGCTCTTGAAGAAATCACTAGTACAATGGGTTCAACCTACTGGAAATTTGATGCATTGCTTGTGATTGCTCTTCTCAAAATGACACCTTCTGTCACGTATGAATTCAAGGGGTGCAACCTTCCCGGCACGCTTCCGCCTCAATTGGTAAAACTTCCATACCTCAAACTAGTTGACTTTGCTTTTAACTACCTAAATGGTACGATTCCGAAGGAATGGGGTTCGATTGAACTAACTTCAATCTCGCTACTTGTTAATCGTTTGTCGGGAGAGATTCCTAAGGAGTTGGGAAACATTACCACTTTAACATACTTGAACCTTGAAGCAAACCAATTTTCCGGTCTTGTTCCCGCTGAACTTGGAAGTCTACTTAACCTGCAGACTTTGATTTTATCATCCAATAAATTGTCCGGGAACTTGCCATTGACATTTTCTCAGTTACAGAATTTGACAAATTTTAGGATAAATGATAATAGTTTCAACGGAAAAATACCGAGCTTCATACAGAATTGGAAACAGCTTCAGAGACTAGAAATGCATGCAAGTGGACTGGAGGGACCTATCCCGTCAAATATATCGCTTTTGACTAATTTATCTCAACTGAGGATTAGTGACATCAATGGTCCTAGTCAGGATATTCCTATTTTAAGCAACATGACAGGAATGATAAGAGTGGTTTTGAGGAATTGCAATATTACCGGAGAGATTCCTAGCTATTTCTGGACAATGAAGGATTTGGAAATGTTGGATCTCAGTTTCAATAATTTGTTTGGTGAAATTCCAGCGAGGGCTCATGTGGGACATTTGAGATTTCTCTTCTTAACTGGCAACAAGCTAAGTGGTAACGTACCTGACTCAGTGTTGATGGCCGGAAGCAATGTTGATATTTCTTACAACAACTTTACATATCAAGGACTTGAGAAATCGTCTTGTGGAGATTATCTGAATTTAAATCTAAACATGTTCCGGAGCTCCTTAGGGACCAATGCATTACAAGGGATTCTTCCATGTTCAACAGCTTTCAAATGTCCTAGATATTCAACTTGTTTACACGTTAGCTGTGGAGGAAAGGATATAACTGTGAGGGAAAATGGTGACGATATTCTCTATGTTGGAGATGGATATGTCGTAGGCGGTGCTGCTAAACTTTTTAAGGACCATGAAAACCACTGGGGGTTTAGTAGCACTGGGGACTTCATGGATGACGGTGATTTCCAAAATACGCGTTACTCAAGGTCGTTGTCATCTTCAAGTTTGCCGGAATTATATAAAACGGCTCGCGCATCTCCCATTACGCTTACTTATTTTCACTATTGCTTGGAAAATGGGAAATATACTGTGCATCTCCACTTTGCAGAAATACAATTTTCAAATGATAAAACATTTAGAAGTCTTGGAAAGCGCTTATTTAATATCTATGTTCAGGGAGTATTAGTTTGGAAGGATTTTGATATTGAAGACAAGCCACACCTTGCTCAAAAAACGCGTAAATTATCAACATATAACGTGACTGTAACAGACGGTATTTTGGAGATTCGATTCTACTGGGCTGGCAAGGGGACTACAAGGATTCCTGTTAGTGGAGTTTATGGTCCTCTTATATCAGCTTTCTCTATTGTTTCAGATTCTAAACCTTGTTCAGACCAAAAGAATGATGGAAGGCGTAAAGTAGTCATTGGAGTAGGATTTGGAGTTACAGCTTTATGTCTAGTCCTTATTGTGGTAGGCATTTTTTGGAGGAAAGGCTACATTAAAGAAATTAAGAGAAGAGAAAAAGTTTTCAAAGGGCAAGATTTTCATATGAGGACATTTACATTAAAACAAATTAGAGCCGCCACAGATGGATTTAGTCCTGCTAATAAGGTTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATGGGTAGCAGTCAAACAGCTCTCCTCGAAGTCTCGGCAGGGAAATCATGAATTTTTAAATGAGATAGGCATGATATCTTGTTTTCAGCATCCTAATCTAGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCCATGCTTTATTCAGTTCAGAAAATCAGCTTAAACTTGATTGGCCATCAAGGCTTAGGATCTGCATTGGCATAGCAAAAGGTCTTGCATTTCTTCACGAAGAATCACGACTCAAGGTTGTTCATCGAGATATAAAAGCTACTAATGTGTTACTGGATGGGAACTTAAACCCTAAAATATCAGATTTTGGGTTGGCTAGGCTCGACGAAGAGGATAAGACTCATATCATCACCCGAGTGGCGGGTACAATAGGATATATGGCACCGGAGTATGCTTTATGGGGTTACTTGAGTTACAAGGCTGACGTTTACAGTTTTGGAGTCGTGGTCTTGGAAACTGTTAGTGGAAAAAGTAATAACAATTACATGCCAAGTGATAATTGTGTTTGCCTTTTAGATAAGGCACTATATCTGGAACGGACTGAAAACGTTATGCAACTGGTTGATGAGAGGTTAGGATCAGAGGTAAACCCAACTGAAACGAAAAATACGGTAAAAGTAGCTCTCTTGTGTACGAATCCATCGCCGTCACTTAGGCCTACAATGTCAGAGGTTGTAAACATGCTTGAAGGAAGAATAAGCATTCCAGATATTATCCCGGAAGGGAACACTTACACCCAAGATTTAAGGTTTAAAGCTATGAGGGACGTCCATCAAAATAAGGAAGGACATAGTTTGAGCTCAAGCCGGACAGATGATTCAACAGGAATCCTTACACATAGCACTCCCTCAATGTTAGGCAATGATATTCATGAGATTTCCTCCGAGCTTTGA 2955 0.3953 MLSKIFFTLSIIAFTCFLHYAQSKLPQQELDALEEITSTMGSTYWKFDALLVIALLKMTPSVTYEFKGCNLPGTLPPQLVKLPYLKLVDFAFNYLNGTIPKEWGSIELTSISLLVNRLSGEIPKELGNITTLTYLNLEANQFSGLVPAELGSLLNLQTLILSSNKLSGNLPLTFSQLQNLTNFRINDNSFNGKIPSFIQNWKQLQRLEMHASGLEGPIPSNISLLTNLSQLRISDINGPSQDIPILSNMTGMIRVVLRNCNITGEIPSYFWTMKDLEMLDLSFNNLFGEIPARAHVGHLRFLFLTGNKLSGNVPDSVLMAGSNVDISYNNFTYQGLEKSSCGDYLNLNLNMFRSSLGTNALQGILPCSTAFKCPRYSTCLHVSCGGKDITVRENGDDILYVGDGYVVGGAAKLFKDHENHWGFSSTGDFMDDGDFQNTRYSRSLSSSSLPELYKTARASPITLTYFHYCLENGKYTVHLHFAEIQFSNDKTFRSLGKRLFNIYVQGVLVWKDFDIEDKPHLAQKTRKLSTYNVTVTDGILEIRFYWAGKGTTRIPVSGVYGPLISAFSIVSDSKPCSDQKNDGRRKVVIGVGFGVTALCLVLIVVGIFWRKGYIKEIKRREKVFKGQDFHMRTFTLKQIRAATDGFSPANKVGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNHEFLNEIGMISCFQHPNLVKLHGCCIEGDQLILVYEYMENNSLAHALFSSENQLKLDWPSRLRICIGIAKGLAFLHEESRLKVVHRDIKATNVLLDGNLNPKISDFGLARLDEEDKTHIITRVAGTIGYMAPEYALWGYLSYKADVYSFGVVVLETVSGKSNNNYMPSDNCVCLLDKALYLERTENVMQLVDERLGSEVNPTETKNTVKVALLCTNPSPSLRPTMSEVVNMLEGRISIPDIIPEGNTYTQDLRFKAMRDVHQNKEGHSLSSSRTDDSTGILTHSTPSMLGNDIHEISSEL 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02844 984 Gene3D Phosphorylase Kinase; domain 1 610 721 - -
Vifa6g02844 984 CDD STKc_IRAK 652 918 - -
Vifa6g02844 984 FunFam Leucine-rich repeat receptor protein kinase EMS1 75 171 - -
Vifa6g02844 984 Gene3D Transferase(Phosphotransferase) domain 1 722 923 - -
Vifa6g02844 984 Gene3D Ribonuclease Inhibitor 52 170 IPR032675 -
Vifa6g02844 984 SUPERFAMILY L domain-like 66 315 - -
Vifa6g02844 984 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 61 952 - -
Vifa6g02844 984 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 172 237 - -
Vifa6g02844 984 Pfam Malectin domain 379 567 IPR021720 -
Vifa6g02844 984 SUPERFAMILY Protein kinase-like (PK-like) 629 917 IPR011009 -
Vifa6g02844 984 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 377 572 - -
Vifa6g02844 984 SMART serkin_6 646 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02844 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Vifa6g02844 984 Gene3D Ribonuclease Inhibitor 171 373 IPR032675 -
Vifa6g02844 984 MobiDBLite consensus disorder prediction 956 976 - -
Vifa6g02844 984 ProSiteProfiles Protein kinase domain profile. 646 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02844 984 Gene3D - 376 574 - -
Vifa6g02844 984 MobiDBLite consensus disorder prediction 945 984 - -
Vifa6g02844 984 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 615 721 - -
Vifa6g02844 984 Pfam Protein tyrosine and serine/threonine kinase 650 916 IPR001245 GO:0004672|GO:0006468
Vifa6g02844 984 FunFam Putative LRR receptor-like serine/threonine-protein kinase 722 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02844 Vifa-Chr6 951338000 951349034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02844 7 811 Receptor kinase-like Gene Family AT1G29750 57.332 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g02844 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02844 - - mtr:11406167 1656.34