Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02843 ATGCTATCTAAGATCTTCTTCACTCTCTCAATCATAGCATTTACTTGTTTCCTTCATTATGCACAATCTAAACTTCCACAGCAAGAGCTTGATGCTCTTGAAGAAATCACTAGTACAATGGGTTCAACCTACTGGAAATTTGATGGTGATTCATGTCAAATTCAAATGCTTGGTTTAACTAAAAAACCACCTGATGGATGCCAAAGTAGCATTGCTTGTGATTGCTCTTCTCAAAATGACACCTTCTGTCACGTAGTAAGGATTGAATTCAAGGGGTGCAACCTTCCCGGCACGCTTCCGCCTCAATTGGTAAAACTTCCATACCTCAAACTAGTTGACTTTGCTTTTAACTACCTAAATGGTACGATTCCGAAGGAATGGGGTTCGATTGAACTAACTTCAATCTCGCTACTTGTTAATCGTTTGTCGGGAGAGATTCCTAAGGAGTTGGGAAACATTACCACTTTAACATACTTGAACCTTGAAGCAAACCAATTTTCCGGTCTTGTTCCCGCTGAACTTGGAAGTCTACTTAACCTGCAGACTTTGATTTTATCATCCAATAAATTGTCCGGGAACTTGCCATTGACATTTTCTCAGTTACAGAATTTGACAAATTTGATAAATGATAATAGTTTCAACGGAAAAATACCGAGCTTCATACAGAATTGGAAACAGCTTCAGAGACTAGAAATGCATGCAAGTGGACTGGAGGGACCTATCCCGTCAAATATATCGCTTTTGACTAATTTATCTCAACTGAGGATTAGTGACATCAATGGTCCTAGTCAGGATATTCCTATTTTAAGCAACATGACAGGAATGATAAGAGTGGTTTTGAGGAATTGCAATATTACCGGAGAGATTCCTAGCTATTTCTGGACAATGAAGGATTTGGAAATGTTGGATCTCAGTTTCAATAATTTGTTTGGTGAAATTCCAGCGAGGGCTCATGTGGGACATTTGAGATTTCTCTTCTTAACTGGCAACAAGCTAAGTGGTAACGTACCTGACTCAGTGTTGATGGCCGGAAGCAATGTTGATATTTCTTACAACAACTTTACATATCAAGGACTTGAGAAATCGTCTTGTGGAGATTATCTGAATTTAAATCTAAACATGTTCCGGAGCTCCTTAGGGACCAATGCATTACAAGGGATTCTTCCATGTTCAACAGCTTTCAAATGTCCTAGATATTCAACTTGTTTACACGTTAGCTGTGGAGGAAAGGATATAACTGTGAGGGAAAATGGTGACGATATTCTCTATGTTGGAGATGGATATGTCGTAGGCGGTGCTGCTAAACTTTTTAAGGACCATGAAAACCACTGGGGGTTTAGTAGCACTGGGGACTTCATGGATGACGGTGATTTCCAAAATACGCGTTACTCAAGGTCGTTGTCATCTTCAAGTTTGCCGGAATTATATAAAACGGCTCGCGCATCTCCCATTACGCTTACTTATTTTCACTATTGCTTGGAAAATGGGAAATATACTGTGCATCTCCACTTTGCAGAAATACAATTTTCAAATGATAAAACATTTAGAAGTCTTGGAAAGCGCTTATTTAATATCTATGTTCAGGGAGTATTAGTTTGGAAGGATTTTGATATTGAAGACAAGCCACACCTTGCTCAAAAAACGCGTAAATTATCAACATATAACGTGACTGTAACAGACGGTATTTTGGAGATTCGATTCTACTGGGCTGGCAAGGGGACTACAAGGATTCCTGTTAGTGGAGTTTATGGTCCTCTTATATCAGCTTTCTCTATTGTTTCAGATTCTAAACCTTGTTCAGACCAAAAGAATGATGGAAGGCGTAAAGTAGTCATTGGAGTAGGATTTGGAGTTACAGCTTTATGTCTAGTCCTTATTGTGGTAGGCATTTTTTGGAGGAAAGGCTACATTAAAGAAATTAAGAGAAGAGAAAAAGTTTTCAAAGGGCAAGATTTTCATATGAGGACATTTACATTAAAACAAATTAGAGCCGCCACAGATGGATTTAGTCCTGCTAATAAGGTTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATGGGTAGCAGTCAAACAGCTCTCCTCGAAGTCTCGGCAGGGAAATCATGAATTTTTAAATGAGATAGGCATGATATCTTGTTTTCAGCATCCTAATCTAGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCCATGCTTTATTCAGTTCAGAAAATCAGCTTAAACTTGATTGGCCATCAAGGCTTAGGATCTGCATTGGCATAGCAAAAGGTCTTGCATTTCTTCACGAAGAATCACGACTCAAGGTTGTTCATCGAGATATAAAAGCTACTAATGTGTTACTGGATGGGAACTTAAACCCTAAAATATCAGATTTTGGGTTGGCTAGGCTCGACGAAGAGGATAAGACTCATATCATCACCCGAGTGGCGGGTACAATAGGATATATGGCACCGGAGTATGCTTTATGGGGTTACTTGAGTTACAAGGCTGACGTTTACAGTTTTGGAGTCGTGGTCTTGGAAACTGTTAGTGGAAAAAGTAATAACAATTACATGCCAAGTGATAATTGTGTTTGCCTTTTAGATAAGGCACTATATCTGGAACGGACTGAAAACGTTATGCAACTGGTTGATGAGAGGTTAGGATCAGAGGTAAACCCAACTGAAACGAAAAATACGGTAAAAGTAGCTCTCTTGTGTACGAATCCATCGCCGTCACTTAGGCCTACAATGTCAGAGGTTGTAAACATGCTTGAAGGAAGAATAAGCATTCCAGATATTATCCCGGAAGGGAACACTTACACCCAAGATTTAAGGTTTAAAGCTATGAGGGACGTCCATCAAAATAAGGAAGGACATAGTTTGAGCTCAAGCCGGACAGATGATTCAACAGGAATCCTTACACATAGCACTCCCTCAATGTTAGGCAATGATATTCATGAGATTTCCTCCGAGCTTTGA 3024 0.3945 MLSKIFFTLSIIAFTCFLHYAQSKLPQQELDALEEITSTMGSTYWKFDGDSCQIQMLGLTKKPPDGCQSSIACDCSSQNDTFCHVVRIEFKGCNLPGTLPPQLVKLPYLKLVDFAFNYLNGTIPKEWGSIELTSISLLVNRLSGEIPKELGNITTLTYLNLEANQFSGLVPAELGSLLNLQTLILSSNKLSGNLPLTFSQLQNLTNLINDNSFNGKIPSFIQNWKQLQRLEMHASGLEGPIPSNISLLTNLSQLRISDINGPSQDIPILSNMTGMIRVVLRNCNITGEIPSYFWTMKDLEMLDLSFNNLFGEIPARAHVGHLRFLFLTGNKLSGNVPDSVLMAGSNVDISYNNFTYQGLEKSSCGDYLNLNLNMFRSSLGTNALQGILPCSTAFKCPRYSTCLHVSCGGKDITVRENGDDILYVGDGYVVGGAAKLFKDHENHWGFSSTGDFMDDGDFQNTRYSRSLSSSSLPELYKTARASPITLTYFHYCLENGKYTVHLHFAEIQFSNDKTFRSLGKRLFNIYVQGVLVWKDFDIEDKPHLAQKTRKLSTYNVTVTDGILEIRFYWAGKGTTRIPVSGVYGPLISAFSIVSDSKPCSDQKNDGRRKVVIGVGFGVTALCLVLIVVGIFWRKGYIKEIKRREKVFKGQDFHMRTFTLKQIRAATDGFSPANKVGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNHEFLNEIGMISCFQHPNLVKLHGCCIEGDQLILVYEYMENNSLAHALFSSENQLKLDWPSRLRICIGIAKGLAFLHEESRLKVVHRDIKATNVLLDGNLNPKISDFGLARLDEEDKTHIITRVAGTIGYMAPEYALWGYLSYKADVYSFGVVVLETVSGKSNNNYMPSDNCVCLLDKALYLERTENVMQLVDERLGSEVNPTETKNTVKVALLCTNPSPSLRPTMSEVVNMLEGRISIPDIIPEGNTYTQDLRFKAMRDVHQNKEGHSLSSSRTDDSTGILTHSTPSMLGNDIHEISSEL 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02843 1007 Gene3D Ribonuclease Inhibitor 207 395 IPR032675 -
Vifa6g02843 1007 Gene3D - 399 597 - -
Vifa6g02843 1007 SMART serkin_6 669 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02843 1007 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 31 194 - -
Vifa6g02843 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase 745 951 - -
Vifa6g02843 1007 Pfam Malectin domain 402 590 IPR021720 -
Vifa6g02843 1007 ProSiteProfiles Protein kinase domain profile. 669 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02843 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 195 260 - -
Vifa6g02843 1007 Gene3D Ribonuclease Inhibitor 45 202 IPR032675 -
Vifa6g02843 1007 MobiDBLite consensus disorder prediction 979 999 - -
Vifa6g02843 1007 MobiDBLite consensus disorder prediction 968 1007 - -
Vifa6g02843 1007 SUPERFAMILY Protein kinase-like (PK-like) 652 940 IPR011009 -
Vifa6g02843 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 975 - -
Vifa6g02843 1007 Gene3D Phosphorylase Kinase; domain 1 634 744 - -
Vifa6g02843 1007 Pfam Protein tyrosine and serine/threonine kinase 673 939 IPR001245 GO:0004672|GO:0006468
Vifa6g02843 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Vifa6g02843 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 638 744 - -
Vifa6g02843 1007 SUPERFAMILY L domain-like 71 338 - -
Vifa6g02843 1007 CDD STKc_IRAK 675 941 - -
Vifa6g02843 1007 Gene3D Transferase(Phosphotransferase) domain 1 745 946 - -
Vifa6g02843 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02843 Vifa-Chr6 951338000 951349034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02843 7 834 Receptor kinase-like Gene Family AT1G29750 58.894 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g02843 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02843 - - mtr:11406167 1732.23