Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02842 ATGCTATCTAAGATCTTCTTCACTCTCTCAATCATAGCATTTACTTGTTTCCTTCATTATGCACAATCTAAACTTCCACAGCAAGAGCTTGATGCTCTTGAAGAAATCACTAGTACAATGGGTTCAACCTACTGGAAATTTGATGGTGATTCATGTCAAATTCAAATGCTTGGTTTAACTAAAAAACCACCTGATGGATGCCAAAGTAGCATTGCTTGTGATTGCTCTTCTCAAAATGACACCTTCTGTCACGTAGTAAGGATTGAATTCAAGGGGTGCAACCTTCCCGGCACGCTTCCGCCTCAATTGGTAAAACTTCCATACCTCAAACTAGTTGACTTTGCTTTTAACTACCTAAATGGTACGATTCCGAAGGAATGGGGTTCGATTGAACTAACTTCAATCTCGCTACTTGTTAATCGTTTGTCGGGAGAGATTCCTAAGGAGTTGGGAAACATTACCACTTTAACATACTTGAACCTTGAAGCAAACCAATTTTCCGGTCTTGTTCCCGCTGAACTTGGAAGTCTACTTAACCTGCAGACTTTGATTTTATCATCCAATAAATTGTCCGGGAACTTGCCATTGACATTTTCTCAGTTACAGAATTTGACAAATTTTAGGATAAATGATAATAGTTTCAACGGAAAAATACCGAGCTTCATACAGAATTGGAAACAGCTTCAGAGACTAGAAATGCATGCAAGTGGACTGGAGGGACCTATCCCGTCAAATATATCGCTTTTGACTAATTTATCTCAACTGAGGATTAGTGACATCAATGGTCCTAGTCAGGATATTCCTATTTTAAGCAACATGACAGGAATGATAAGAGTGGTTTTGAGGAATTGCAATATTACCGGAGAGATTCCTAGCTATTTCTGGACAATGAAGGATTTGGAAATGTTGGATCTCAGTTTCAATAATTTGTTTGGTGAAATTCCAGCGAGGGCTCATGTGGGACATTTGAGATTTCTCTTCTTAACTGGCAACAAGCTAAGTGGTAACGTACCTGACTCAGTGTTGATGGCCGGAAGCAATGTTGATATTTCTTACAACAACTTTACATATCAAGGACTTGAGAAATCGTCTTGTGGAGATTATCTGAATTTAAATCTAAACATGTTCCGGAGCTCCTTAGGGACCAATGCATTACAAGGGATTCTTCCATGTTCAACAGCTTTCAAATGTCCTAGATATTCAACTTGTTTACACGTTAGCTGTGGAGGAAAGGATATAACTGTGAGGGAAAATGGTGACGATATTCTCTATGTTGGAGATGGATATGTCGTAGGCGGTGCTGCTAAACTTTTTAAGGACCATGAAAACCACTGGGGGTTTAGTAGCACTGGGGACTTCATGGATGACGGTGATTTCCAAAATACGCGTTACTCAAGGTCGTTGTCATCTTCAAGTTTGCCGGAATTATATAAAACGGCTCGCGCATCTCCCATTACGCTTACTTATTTTCACTATTGCTTGGAAAATGGGAAATATACTGTGCATCTCCACTTTGCAGAAATACAATTTTCAAATGATAAAACATTTAGAAGTCTTGGAAAGCGCTTATTTAATATCTATGTTCAGGGAGTATTAGTTTGGAAGGATTTTGATATTGAAGACAAGCCACACCTTGCTCAAAAAACGCGTAAATTATCAACATATAACGTGACTGTAACAGACGGTATTTTGGAGATTCGATTCTACTGGGCTGGCAAGGGGACTACAAGGATTCCTGTTAGTGGAGTTTATGGTCCTCTTATATCAGCTTTCTCTATTGTTTCAGATTCTAAACCTTGTTCAGACCAAAAGAATGATGGAAGGCGTAAAGTAGTCATTGGAGTAGGATTTGGAGTTACAGCTTTATGTCTAGTCCTTATTGTGGTAGGCATTTTTTGGAGGAAAGGCTACATTAAAGAAATTAAGAGAAGAGAAAAAGTTTTCAAAGGGCAAGATTTTCATATGAGGACATTTACATTAAAACAAATTAGAGCCGCCACAGATGGATTTAGTCCTGCTAATAAGGTTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATGGGTAGCAGTCAAACAGCTCTCCTCGAAGTCTCGGCAGGGAAATCATGAATTTTTAAATGAGATAGGCATGATATCTTGTTTTCAGCATCCTAATCTAGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCCATGCTTTATTCAGTTCAGAAAATCAGCTTAAACTTGATTGGCCATCAAGGCTTAGGATCTGCATTGGCATAGCAAAAGGTCTTGCATTTCTTCACGAAGAATCACGACTCAAGGTTGTTCATCGAGATATAAAAGCTACTAATGTGTTACTGGATGGGAACTTAAACCCTAAAATATCAGATTTTGGGTTGGCTAGGCTCGACGAAGAGGATAAGACTCATATCATCACCCGAGTGGCGGGTACAATAGGATATATGGCACCGGAGTATGCTTTATGGGGTTACTTGAGTTACAAGGCTGACGTTTACAGTTTTGGAGTCGTGGTCTTGGAAACTGTTAGTGGAAAAAGTAATAACAATTACATGCCAAGTGATAATTGTGTTTGCCTTTTAGATAAGGCACTATATCTGGAACGGACTGAAAACGTTATGCAACTGGTTGATGAGAGGTTAGGATCAGAGGTAAACCCAACTGAAACGAAAAATACGGTAAAAGTAGCTCTCTTGTGTACGAATCCATCGCCGTCACTTAGGCCTACAATGTCAGAGGTTGTAAACATGCTTGAAGGAAGAATAAGCATTCCAGATATTATCCCGGAAGGGAACACTTACACCCAAGATTTAAGGTTTAAAGCTATGAGGGACGTCCATCAAAATAAGGAAGGACATAGTTTGAGCTCAAGCCGGACAGATGATTCAACAGGAATCCTTACACATAGCACTCCCTCAATGTTAGGCAATGATATTCATGAGATTTCCTCCGAGCTTTGA 3027 0.3944 MLSKIFFTLSIIAFTCFLHYAQSKLPQQELDALEEITSTMGSTYWKFDGDSCQIQMLGLTKKPPDGCQSSIACDCSSQNDTFCHVVRIEFKGCNLPGTLPPQLVKLPYLKLVDFAFNYLNGTIPKEWGSIELTSISLLVNRLSGEIPKELGNITTLTYLNLEANQFSGLVPAELGSLLNLQTLILSSNKLSGNLPLTFSQLQNLTNFRINDNSFNGKIPSFIQNWKQLQRLEMHASGLEGPIPSNISLLTNLSQLRISDINGPSQDIPILSNMTGMIRVVLRNCNITGEIPSYFWTMKDLEMLDLSFNNLFGEIPARAHVGHLRFLFLTGNKLSGNVPDSVLMAGSNVDISYNNFTYQGLEKSSCGDYLNLNLNMFRSSLGTNALQGILPCSTAFKCPRYSTCLHVSCGGKDITVRENGDDILYVGDGYVVGGAAKLFKDHENHWGFSSTGDFMDDGDFQNTRYSRSLSSSSLPELYKTARASPITLTYFHYCLENGKYTVHLHFAEIQFSNDKTFRSLGKRLFNIYVQGVLVWKDFDIEDKPHLAQKTRKLSTYNVTVTDGILEIRFYWAGKGTTRIPVSGVYGPLISAFSIVSDSKPCSDQKNDGRRKVVIGVGFGVTALCLVLIVVGIFWRKGYIKEIKRREKVFKGQDFHMRTFTLKQIRAATDGFSPANKVGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNHEFLNEIGMISCFQHPNLVKLHGCCIEGDQLILVYEYMENNSLAHALFSSENQLKLDWPSRLRICIGIAKGLAFLHEESRLKVVHRDIKATNVLLDGNLNPKISDFGLARLDEEDKTHIITRVAGTIGYMAPEYALWGYLSYKADVYSFGVVVLETVSGKSNNNYMPSDNCVCLLDKALYLERTENVMQLVDERLGSEVNPTETKNTVKVALLCTNPSPSLRPTMSEVVNMLEGRISIPDIIPEGNTYTQDLRFKAMRDVHQNKEGHSLSSSRTDDSTGILTHSTPSMLGNDIHEISSEL 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02842 1008 MobiDBLite consensus disorder prediction 980 1000 - -
Vifa6g02842 1008 Pfam Protein tyrosine and serine/threonine kinase 674 940 IPR001245 GO:0004672|GO:0006468
Vifa6g02842 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 639 745 - -
Vifa6g02842 1008 Gene3D Ribonuclease Inhibitor 271 404 IPR032675 -
Vifa6g02842 1008 MobiDBLite consensus disorder prediction 969 1008 - -
Vifa6g02842 1008 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 31 194 - -
Vifa6g02842 1008 SUPERFAMILY Protein kinase-like (PK-like) 653 941 IPR011009 -
Vifa6g02842 1008 Gene3D - 405 598 - -
Vifa6g02842 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 195 261 - -
Vifa6g02842 1008 Gene3D Ribonuclease Inhibitor 195 270 IPR032675 -
Vifa6g02842 1008 Gene3D Ribonuclease Inhibitor 42 194 IPR032675 -
Vifa6g02842 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Vifa6g02842 1008 CDD STKc_IRAK 676 942 - -
Vifa6g02842 1008 SUPERFAMILY L domain-like 71 339 - -
Vifa6g02842 1008 Pfam Malectin domain 403 591 IPR021720 -
Vifa6g02842 1008 Gene3D Transferase(Phosphotransferase) domain 1 746 947 - -
Vifa6g02842 1008 ProSiteProfiles Protein kinase domain profile. 670 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02842 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 952 - -
Vifa6g02842 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 596 - -
Vifa6g02842 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 976 - -
Vifa6g02842 1008 SMART serkin_6 670 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02842 1008 Gene3D Phosphorylase Kinase; domain 1 635 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02842 Vifa-Chr6 951338000 951349034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02842 7 835 Receptor kinase-like Gene Family AT1G29750 59.135 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g02842 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02842 - - mtr:11406167 1741.09