Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02841 ATGCTATCTAAGATCTTCTTCACTCTCTCAATCATAGCATTTACTTGTTTCCTTCATTATGCACAATCTAAACTTCCACAGCAAGAGCTTGATGCTCTTGAAGAAATCACTAGTACAATGGGTTCAACCTACTGGAAATTTGATGGTGATTCATGTCAAATTCAAATGCTTGGTTTAACTAAAAAACCACCTGATGGATGCCAAAGTAGCATTGCTTGTGATTGCTCTTCTCAAAATGACACCTTCTGTCACGTAGTAAGGATTGAATTCAAGGGGTGCAACCTTCCCGGCACGCTTCCGCCTCAATTGGTAAAACTTCCATACCTCAAACTAGTTGACTTTGCTTTTAACTACCTAAATGGTACGATTCCGAAGGAATGGGGTTCGATTGAACTAACTTCAATCTCGCTACTTGTTAATCGTTTGTCGGGAGAGATTCCTAAGGAGTTGGGAAACATTACCACTTTAACATACTTGAACCTTGAAGCAAACCAATTTTCCGGTCTTGTTCCCGCTGAACTTGGAAGTCTACTTAACCTGCAGACTTTGATTTTATCATCCAATAAATTGTCCGGGAACTTGCCATTGACATTTTCTCAGTTACAGAATTTGACAAATTTTAGGATAAATGATAATAGTTTCAACGGAAAAATACCGAGCTTCATACAGAATTGGAAACAGCTTCAGAGACTAGAAATGCATGCAAGTGGACTGGAGGGACCTATCCCGTCAAATATATCGCTTTTGACTAATTTATCTCAACTGAGGATTAGTGACATCAATGGTCCTAGTCAGGATATTCCTATTTTAAGCAACATGACAGGAATGATAAGAGTGGTTTTGAGGAATTGCAATATTACCGGAGAGATTCCTAGCTATTTCTGGACAATGAAGGATTTGGAAATGTTGGATCTCAGTTTCAATAATTTGTTTGGTGAAATTCCAGCGAGGGCTCATGTGGGACATTTGAGATTTCTCTTCTTAACTGGCAACAAGCTAAGTGGTAACGTACCTGACTCAGTGTTGATGGCCGGAAGCAATGTGTATGTTCCTTGCTTCAATCATTTCTACTTAAACATTGAAAATGATATTTCTTACAACAACTTTACATATCAAGGACTTGAGAAATCGTCTTGTGGAGATTATCTGAATTTAAATCTAAACATGTTCCGGAGCTCCTTAGGGACCAATGCATTACAAGGGATTCTTCCATGTTCAACAGCTTTCAAATGTCCTAGATATTCAACTTGTTTACACGTTAGCTGTGGAGGAAAGGATATAACTGTGAGGGAAAATGGTGACGATATTCTCTATGTTGGAGATGGATATGTCGTAGGCGGTGCTGCTAAACTTTTTAAGGACCATGAAAACCACTGGGGGTTTAGTAGCACTGGGGACTTCATGGATGACGGTGATTTCCAAAATACGCGTTACTCAAGGTCGTTGTCATCTTCAAGTTTGCCGGAATTATATAAAACGGCTCGCGCATCTCCCATTACGCTTACTTATTTTCACTATTGCTTGGAAAATGGGAAATATACTGTGCATCTCCACTTTGCAGAAATACAATTTTCAAATGATAAAACATTTAGAAGTCTTGGAAAGCGCTTATTTAATATCTATGTTCAGGGAGTATTAGTTTGGAAGGATTTTGATATTGAAGACAAGCCACACCTTGCTCAAAAAACGCGTAAATTATCAACATATAACGTGACTGTAACAGACGGTATTTTGGAGATTCGATTCTACTGGGCTGGCAAGGGGACTACAAGGATTCCTGTTAGTGGAGTTTATGGTCCTCTTATATCAGCTTTCTCTATTGTTTCAGATTCTAAACCTTGTTCAGACCAAAAGAATGATGGAAGGCGTAAAGTAGTCATTGGAGTAGGATTTGGAGTTACAGCTTTATGTCTAGTCCTTATTGTGGTAGGCATTTTTTGGAGGAAAGGCTACATTAAAGAAATTAAGAGAAGAGAAAAAGTTTTCAAAGGGCAAGATTTTCATATGAGGACATTTACATTAAAACAAATTAGAGCCGCCACAGATGGATTTAGTCCTGCTAATAAGGTTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATGGGTAGCAGTCAAACAGCTCTCCTCGAAGTCTCGGCAGGGAAATCATGAATTTTTAAATGAGATAGGCATGATATCTTGTTTTCAGCATCCTAATCTAGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCCATGCTTTATTCAGTTCAGAAAATCAGCTTAAACTTGATTGGCCATCAAGGCTTAGGATCTGCATTGGCATAGCAAAAGGTCTTGCATTTCTTCACGAAGAATCACGACTCAAGGTTGTTCATCGAGATATAAAAGCTACTAATGTGTTACTGGATGGGAACTTAAACCCTAAAATATCAGATTTTGGGTTGGCTAGGCTCGACGAAGAGGATAAGACTCATATCATCACCCGAGTGGCGGGTACAATAGGATATATGGCACCGGAGTATGCTTTATGGGGTTACTTGAGTTACAAGGCTGACGTTTACAGTTTTGGAGTCGTGGTCTTGGAAACTGTTAGTGGAAAAAGTAATAACAATTACATGCCAAGTGATAATTGTGTTTGCCTTTTAGATAAGGCACTATATCTGGAACGGACTGAAAACGTTATGCAACTGGTTGATGAGAGGTTAGGATCAGAGGTAAACCCAACTGAAACGAAAAATACGGTAAAAGTAGCTCTCTTGTGTACGAATCCATCGCCGTCACTTAGGCCTACAATGTCAGAGGTTGTAAACATGCTTGAAGGAAGAATAAGCATTCCAGATATTATCCCGGAAGGGAACACTTACACCCAAGATTTAAGGTTTAAAGCTATGAGGGACGTCCATCAAAATAAGGAAGGACATAGTTTGAGCTCAAGCCGGACAGATGATTCAACAGGAATCCTTACACATAGCACTCCCTCAATGTTAGGCAATGATATTCATGAGATTTCCTCCGAGCTTTGA 3069 0.393 MLSKIFFTLSIIAFTCFLHYAQSKLPQQELDALEEITSTMGSTYWKFDGDSCQIQMLGLTKKPPDGCQSSIACDCSSQNDTFCHVVRIEFKGCNLPGTLPPQLVKLPYLKLVDFAFNYLNGTIPKEWGSIELTSISLLVNRLSGEIPKELGNITTLTYLNLEANQFSGLVPAELGSLLNLQTLILSSNKLSGNLPLTFSQLQNLTNFRINDNSFNGKIPSFIQNWKQLQRLEMHASGLEGPIPSNISLLTNLSQLRISDINGPSQDIPILSNMTGMIRVVLRNCNITGEIPSYFWTMKDLEMLDLSFNNLFGEIPARAHVGHLRFLFLTGNKLSGNVPDSVLMAGSNVYVPCFNHFYLNIENDISYNNFTYQGLEKSSCGDYLNLNLNMFRSSLGTNALQGILPCSTAFKCPRYSTCLHVSCGGKDITVRENGDDILYVGDGYVVGGAAKLFKDHENHWGFSSTGDFMDDGDFQNTRYSRSLSSSSLPELYKTARASPITLTYFHYCLENGKYTVHLHFAEIQFSNDKTFRSLGKRLFNIYVQGVLVWKDFDIEDKPHLAQKTRKLSTYNVTVTDGILEIRFYWAGKGTTRIPVSGVYGPLISAFSIVSDSKPCSDQKNDGRRKVVIGVGFGVTALCLVLIVVGIFWRKGYIKEIKRREKVFKGQDFHMRTFTLKQIRAATDGFSPANKVGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNHEFLNEIGMISCFQHPNLVKLHGCCIEGDQLILVYEYMENNSLAHALFSSENQLKLDWPSRLRICIGIAKGLAFLHEESRLKVVHRDIKATNVLLDGNLNPKISDFGLARLDEEDKTHIITRVAGTIGYMAPEYALWGYLSYKADVYSFGVVVLETVSGKSNNNYMPSDNCVCLLDKALYLERTENVMQLVDERLGSEVNPTETKNTVKVALLCTNPSPSLRPTMSEVVNMLEGRISIPDIIPEGNTYTQDLRFKAMRDVHQNKEGHSLSSSRTDDSTGILTHSTPSMLGNDIHEISSEL 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02841 1022 Pfam Malectin domain 417 605 IPR021720 -
Vifa6g02841 1022 Gene3D - 414 612 - -
Vifa6g02841 1022 SUPERFAMILY Protein kinase-like (PK-like) 667 955 IPR011009 -
Vifa6g02841 1022 CDD STKc_IRAK 690 956 - -
Vifa6g02841 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Vifa6g02841 1022 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 653 759 - -
Vifa6g02841 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 195 261 - -
Vifa6g02841 1022 Pfam Protein tyrosine and serine/threonine kinase 688 954 IPR001245 GO:0004672|GO:0006468
Vifa6g02841 1022 SUPERFAMILY L domain-like 71 339 - -
Vifa6g02841 1022 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 31 194 - -
Vifa6g02841 1022 MobiDBLite consensus disorder prediction 983 1022 - -
Vifa6g02841 1022 Gene3D Ribonuclease Inhibitor 197 409 IPR032675 -
Vifa6g02841 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 990 - -
Vifa6g02841 1022 ProSiteProfiles Protein kinase domain profile. 684 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02841 1022 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 415 610 - -
Vifa6g02841 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase 760 966 - -
Vifa6g02841 1022 Gene3D Phosphorylase Kinase; domain 1 649 759 - -
Vifa6g02841 1022 Gene3D Transferase(Phosphotransferase) domain 1 760 961 - -
Vifa6g02841 1022 SMART serkin_6 684 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02841 1022 MobiDBLite consensus disorder prediction 994 1014 - -
Vifa6g02841 1022 Gene3D Ribonuclease Inhibitor 43 196 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02841 Vifa-Chr6 951338000 951349034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02841 7 849 Receptor kinase-like Gene Family AT1G29750 58.156 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g02841 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02841 - - mtr:11406167 1731.46