Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02836 ATGGGTGACAATTCAGGATGCAATGAAAGCAATGAAATTGTTGTAAACGTAAACAAGGATGTCTCAAACAAAACTCAAGATTCAAACGCCCATGCCACTGCTTCTCTCTTGCAGAAGTTGGTAGCTGAAGTGGTAGGAACATATTTCTTAATATTTGCTGGCTGTGCTTCTGTGGTGGTGAACAAGAACAATGACAATGTTGTCACACTTCCTGGTATTTCAATTGTTTGGGGACTTGCTGTCATGGTTCTTGTTTACTCTCTTGGTCATATCTCCGGTGCTCATTTCAATCCGGCGGTAACTATCGCCTTTGCTACCACCAGAAGATTTCCATTGAAACAGGTACCAGTTTATATTGCAGCCCAAGTCTTTGGGTCTACACTTGCAAGTGGAACTCTGAGATTATTATTTAGTGGCAAACATGATCAGTTTGTAGGAACACTTGCGGCTGGATCAAATCTGCAAGCTTTTGTAATGGAATTCATCATCACATTTTATCTCATGTTTATCATATCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAATTGGCTGGGATTGCCGTTGGATCTACTGTACTTTTGAATGTGTTGTTTGCAGGGCCAATCACGGGAGCATCGATGAATCCGGCAAGAAGCATAGGGCCGGCTTTTGTACACAACGAATATAGAGGAATATGGATATACATGGTTTCTCCAATTCTAGGGGCTGTGTGTGGTGCATGGGTTTATAATGTCATTAGGTACACTGATAAACCAGTTCGTGAAATCACCAAAAGTGGATCTTTTCTAAAAGGAACAAAGCCATAG 810 0.4173 MGDNSGCNESNEIVVNVNKDVSNKTQDSNAHATASLLQKLVAEVVGTYFLIFAGCASVVVNKNNDNVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFATTRRFPLKQVPVYIAAQVFGSTLASGTLRLLFSGKHDQFVGTLAAGSNLQAFVMEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVLFAGPITGASMNPARSIGPAFVHNEYRGIWIYMVSPILGAVCGAWVYNVIRYTDKPVREITKSGSFLKGTKP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02836 269 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Vifa6g02836 269 FunFam Aquaporin NIP1-1 4 257 - -
Vifa6g02836 269 SUPERFAMILY Aquaporin-like 34 258 IPR023271 -
Vifa6g02836 269 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02836 269 Gene3D Glycerol uptake facilitator protein. 3 259 IPR023271 -
Vifa6g02836 269 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02836 269 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02836 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02836 269 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02836 269 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02836 269 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02836 269 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02836 269 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02836 269 PANTHER AQUAPORIN NIP2-1 21 264 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02836 Vifa-Chr6 950947537 950949162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02836 36 269 Major Intrinsic Protein MIP AT5G37810 61.966 3.66e-105 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02836 K09874 - gmx:100798526 429.483