Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02835 ATGATAAATTCAGCAAGAGTTGAAACCAATGATATTGAAAACAATGATACTGTCTTAGATGTAAACAAAGATTCCTCTCAAGACTCTTATGTTCCTTTCTTGCAAAAGTTAATAGCAGAGGTTGTGGGAACATATTTCTTGTTATTTGCAGGATGTGCTTCGATTATAGTGAACAAGAACCACGACAACGTTGTCACACTTCCTGGGATCGCAATTGTTTGGGGACTTACTTTTGTTGGTGTTGATTTACTCTCTCGGTCATATCTCTGGTGCTCATTTCATCCTGCTGTTACCATTGCTTTTTGCTACTACAAGGAGGTTTCCTCTCATACAGGTACCAGCTTATATACTGGCTCAACTCCTGGGGGTACACTAGCAAGTGGAACTCTAAAATTAATATTCAGTGGCACACATGACCAGTTCTCAGGAACACTTGCAACTGGCTCTAACTTTCAAGCTTTTGCCCTTGAATTCATAGTCACATTTCACCTCATGTTTACAATTTCCGCTGTTGCAACCGATAATAGAGCGATTGGTGAGTTGCTGGAATTGCAGTTGGATCTACATTATTGCTTAATGTGTTGGTTGCAGGGACCGATAACGGGAGCATCAATGATCCGGTTAGAGTTTAGGACCTGCTTTTGTACACAACGAATATAG 660 0.4045 MINSARVETNDIENNDTVLDVNKDSSQDSYVPFLQKLIAEVVGTYFLLFAGCASIIVNKNHDNVVTLPGIAIVWGLTFVGVDLLSRSYLWCSFHPAVTIAFCYYKEVSSHTGTSLYTGSTPGGTLASGTLKLIFSGTHDQFSGTLATGSNFQAFALEFIVTFHLMFTISAVATDNRAIGELLELQLDLHYCLMCWLQGPITGASMIRLEFRTCFCTQRI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02835 219 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02835 219 PRINTS Major intrinsic protein family signature 156 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02835 219 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g02835 219 Gene3D Glycerol uptake facilitator protein. 2 205 IPR023271 -
Vifa6g02835 219 SUPERFAMILY Aquaporin-like 31 205 IPR023271 -
Vifa6g02835 219 PANTHER AQUAPORIN NIP2-1 20 205 IPR034294 -
Vifa6g02835 219 Pfam Major intrinsic protein 31 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02835 Vifa-Chr6 950406785 950408285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02835 22 186 Major Intrinsic Protein MIP AT4G18910 53.757 1.23e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02835 K09874 - gmx:100813448 198.364