Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02834 ATGGATGAAGCACAGGGAAGTTCGAGTTTGCCTCCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCTCGGATCCTATTGTTTCTTGGAGTATGAATAACAAAAGTTTTGTTGTGTGGAATCACCCGGAGTTTGCTAGGGTTTTGCTCCCGAGATTCTTTAAGCATAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGGAAAGTTGATCCAGAACAATGGGAGTTTGCTAATGATGATTTTGTTAAGGGGCAACCGCATCTTATGAAGAATATCCATAGACGGAAGCCGGTTCATAGCCATTCTCTGCATAATCTTCAAGCACAAGCTCCTTTATCAGAGTCTGAAAGGCAGAGTTTGAACGATGAAATAGAGAAACTGAAACACGATAGAGAACAGCTCATAATGGAGATAAATAGATACCAACATGAGTGGCAAACATATGAGATCCAAATGCATTGCTCAAAAGATCGGTTGGAAAAGTTAGAACAAAAGCAGCAAAAGATGTTGTCTTCTGTTTCTCAAGTACTGCAGAAACCTGCGGTTGCTGTAAATCTCTTGCCACTGACAGAAACAATGGATAGAAAACGAAGGTTGCCGGCGAGAAGTGGCCGTGTTGATAATGAAGCTAGTATGGAGGAAGATGGTATGGAAACTTCGGTAGCTTTGCCCAGAGAAATTGCAGAGAGTAACACTCTTTTGACATCAAACTCAGAGAGATTGGATCAACTTGAGTCATCCGCGGCATTTTGGGAAACTGTTGCAAACGAAATCGCAACTAGAAGCTGA 810 0.4148 MDEAQGSSSLPPFLAKTYEMVDDPSSDPIVSWSMNNKSFVVWNHPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVKGQPHLMKNIHRRKPVHSHSLHNLQAQAPLSESERQSLNDEIEKLKHDREQLIMEINRYQHEWQTYEIQMHCSKDRLEKLEQKQQKMLSSVSQVLQKPAVAVNLLPLTETMDRKRRLPARSGRVDNEASMEEDGMETSVALPREIAESNTLLTSNSERLDQLESSAAFWETVANEIATRS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02834 269 FunFam Heat shock transcription factor 1 6 103 - -
Vifa6g02834 269 Coils Coil 166 186 - -
Vifa6g02834 269 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02834 269 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02834 269 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02834 269 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02834 269 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02834 269 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 224 IPR027725 -
Vifa6g02834 269 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02834 269 Gene3D - 5 103 IPR036388 -
Vifa6g02834 269 SUPERFAMILY "Winged helix" DNA-binding domain 8 102 IPR036390 -
Vifa6g02834 269 Coils Coil 110 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02834 Vifa-Chr6 949530985 949532005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02834 1 264 HSF AT4G18880 58.364 1.24e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa6g02834 HSF_DNA-bind 3.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02834 K09419 - gmx:100798004 425.631