Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02824 ATGAAAAGTAAATTCAAATACCCATATACTCAAGAAGAAGAAGACACTTTCATGTCTCAAGATTCCCCTCCTTCTTCCACCACATTAAACATCGATGGCTCTTTCACTTCCATCTCTTCACCATCTAAGAAAAGCAGAAGAGCCATACAGAAAAGGGTGGTGCAAATCCCAATCAAGGAACCTCAAGGATCAAGGCTAAAAGGAGAGAGTAATACTCCACCGTCCGATTCATGGGCATGGAGAAAGTACGGCCAGAAACCTATCAAAGGTTCCCCTTATCCAAGAGCGTACTACAGATGTAGCAGTTGCAAAGGTTGTCCAGCAAGGAAACAAGTCGAGAGAAGCCGCGTGGACCCCACAATGCTCGTCATAACCTACTCCTCCGACCACAACCACCCATGGCCGATTTCAAGAAACACAACAAAACTCTCCATCAAGAAAACCGAACCAGACCCGGTCGAACCGGAAGAGAAATTCGCCGTTAACTTGGTTGACGACGAGTTGGGGTGGTTGGGAGAGATGGACACGACGTCGTCTGCTCCTCTGGAGAGTTCTATCATGGCAGAATTCGATTCTGACTTGGGGTCCTTAATGTTGCCGATGGGGGAAGAAGATGAGTTGCTTTTCGCTGATCTTGGAGAGTTGCCGGAGTGTTCGACGGTGTTCCGGCATGGCTTGTTTGATGGACGGCGGCGGTTAACGGCTCCGTAG 711 0.4852 MKSKFKYPYTQEEEDTFMSQDSPPSSTTLNIDGSFTSISSPSKKSRRAIQKRVVQIPIKEPQGSRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSCKGCPARKQVERSRVDPTMLVITYSSDHNHPWPISRNTTKLSIKKTEPDPVEPEEKFAVNLVDDELGWLGEMDTTSSAPLESSIMAEFDSDLGSLMLPMGEEDELLFADLGELPECSTVFRHGLFDGRRRLTAP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02824 236 Gene3D WRKY domain 64 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g02824 236 SMART WRKY_cls 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02824 236 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02824 236 MobiDBLite consensus disorder prediction 13 44 - -
Vifa6g02824 236 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02824 236 MobiDBLite consensus disorder prediction 1 82 - -
Vifa6g02824 236 FunFam WRKY transcription factor 65 55 135 - -
Vifa6g02824 236 SUPERFAMILY WRKY DNA-binding domain 72 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g02824 236 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 19 220 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02824 Vifa-Chr6 948110250 948111304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02824 24 224 WRKY Transcription Factor Family AT1G29280 55.752 2.42e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa6g02824 WRKY 7.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02824 - - cam:101493438 348.206