Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02823 ATGAAAAGTAAATTCAAATACCCATATACTCAAGAAGAAGAAGACACTTTCATGTCTCAAGATTCCCCTCCTTCTTCCACCACATTAAACATCGATGGCTCTTTCACTTCCATCTCTTCACCATCTAAGAAAAGAAGAGCCATACAGAAAAGGGTGGTGCAAATCCCAATCAAGGAACCTCAAGGATCAAGGCTAAAAGGAGAGAGTAATACTCCACCGTCCGATTCATGGGCATGGAGAAAGTACGGCCAGAAACCTATCAAAGGTTCCCCTTATCCAAGAGCGTACTACAGATGTAGCAGTTGCAAAGGTTGTCCAGCAAGGAAACAAGTCGAGAGAAGCCGCGTGGACCCCACAATGCTCGTCATAACCTACTCCTCCGACCACAACCACCCATGGCCGATTTCAAGAAACACAACAAAACTCTCCATCAAGAAAACCGAACCAGACCCGGTCGAACCGGAAGAGAAATTCGCCGTTAACTTGGTTGACGACGAGTTGGGGTGGTTGGGAGAGATGGACACGACGTCGTCTGCTCCTCTGGAGAGTTCTATCATGGCAGAATTCGATTCTGACTTGGGGTCCTTAATGTTGCCGATGGGGGAAGAAGATGAGTTGCTTTTCGCTGATCTTGGAGAGTTGCCGGAGTGTTCGACGGTGTTCCGGCATGGCTTGTTTGATGGACGGCGGCGGTTAACGGCTCCGTAG 708 0.4845 MKSKFKYPYTQEEEDTFMSQDSPPSSTTLNIDGSFTSISSPSKKRRAIQKRVVQIPIKEPQGSRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSCKGCPARKQVERSRVDPTMLVITYSSDHNHPWPISRNTTKLSIKKTEPDPVEPEEKFAVNLVDDELGWLGEMDTTSSAPLESSIMAEFDSDLGSLMLPMGEEDELLFADLGELPECSTVFRHGLFDGRRRLTAP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02823 235 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 19 219 IPR044810 GO:0003700
Vifa6g02823 235 SMART WRKY_cls 73 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02823 235 FunFam WRKY transcription factor 65 51 134 - -
Vifa6g02823 235 MobiDBLite consensus disorder prediction 13 43 - -
Vifa6g02823 235 ProSiteProfiles WRKY domain profile. 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02823 235 MobiDBLite consensus disorder prediction 1 81 - -
Vifa6g02823 235 Pfam WRKY DNA -binding domain 75 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g02823 235 Gene3D WRKY domain 63 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g02823 235 SUPERFAMILY WRKY DNA-binding domain 71 134 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02823 Vifa-Chr6 948110250 948111304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02823 24 223 WRKY Transcription Factor Family AT1G29280 55.111 8.84e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa6g02823 WRKY 7.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02823 - - cam:101493438 344.739