Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02817 ATGCCAAGTGTGGCTGTAAAACTCTACAGCGTATTCTTCAAGTTCCTCTTGAAGCACCGTTTACAAAACCGGATTCAAGCCCAACCCGACAATAACTCCAACTCGTTTGGTATCACTTCACGACCCGAAGAATCCGTCGCTAACTCTAACCCTTCTTTTACCGACGGCGTCGCCACCAAGGATATCCACATCGATCCTTTCACTTCTCTCTCTATCCGAATCTTTCTTCCTCACTCCGCTCTTTCTCCTCCCGAGCCTCATTCCAAACCTAACTCCAAACCTAAACAACAAGCTCCCGAACCTGGATCTGTACGGAGAAGTAGCTATGGTCCTCCGTTCAGGGAAGAGCAGCTCCGAGGGAGGAATAGTAACGCTGTTGAGGGTTTGAATTTGATGGGCGCTGGTGTTGAAACCAGTGCCGGTTTGTACCGTGGTTACTCGCCGGCGTTGGATAATCGGCGGAGGAAATTACCGGTGATGTTGCACTTTCATGGTGGGGGTTGGATGAATATACACATTGTCCCACCACACGGAGCTGTCTTTGAAATAAGAGTTGCTGATGGATATGGTGCTCGTTGGAATGAAGATGGAAGTAAGTTTATTGGATTTTTAGAACCATACATGCAAGATGGGGAACCATCTCACACAGGTGTGCCTAGATTTACAGTCAACAACCAAGAACACAGCATCACTCAACAGCTAAATAATGGAGTTCGTGCACTTATGTTAGATACATATGATTTTGATGGAGATGTATGGCTATGTCATTCGTTTAAAGGTCAGTGTCATGATGTTACAGCATTTGAACCGGCTATTGATACGTTGAAGGAAATTGAGGCATTTTTATCGGCGAATACAAATGAAATTGTGACAATTATATTGGAAGATTATGTTGAATCTCCAAATGGTTTGACAAAGGTTTTCAGTGATGCTGGTCTTAAGAAGTATTGGTTTCCATTGGCTAGCATGCCAAAAAATGGTGAAAATTGGCCACTAGTTAGTGATTTGGTTGCTAAAAACCAAAGGTTAGTAGTGTTTACTTCTAAAAAGGGTAAGGAGCAAAGTGAAGGCATTGCTTACCAATGGAATTACATGGTTGAAAATCAATCTGCTTTTGTCTCCTTTTTGCTTATTTCTCATGGTTACTGTATAATGTGCGAGCACCTTTCTTTAAATGAACGCCGTTCCACTGCCGCACTTGCATGTGTCTTTTACTTGACTCTAGTTGGTTACAAGGCTTCTGTTCCATACTTCACAGTGCTTCTGCTTCTAAATTATTTTATTTCATTCTATGTAATATTCCACCATATATCCCAAAACCTACTAGTGTTGCGAGAACAGTTGAGCATTATTGAAAATGAGGATGTTCGAGCAATGCATGATGCTGTGTATAAAAAGTACATAATGTTCAAGTAA 1416 0.4188 MPSVAVKLYSVFFKFLLKHRLQNRIQAQPDNNSNSFGITSRPEESVANSNPSFTDGVATKDIHIDPFTSLSIRIFLPHSALSPPEPHSKPNSKPKQQAPEPGSVRRSSYGPPFREEQLRGRNSNAVEGLNLMGAGVETSAGLYRGYSPALDNRRRKLPVMLHFHGGGWMNIHIVPPHGAVFEIRVADGYGARWNEDGSKFIGFLEPYMQDGEPSHTGVPRFTVNNQEHSITQQLNNGVRALMLDTYDFDGDVWLCHSFKGQCHDVTAFEPAIDTLKEIEAFLSANTNEIVTIILEDYVESPNGLTKVFSDAGLKKYWFPLASMPKNGENWPLVSDLVAKNQRLVVFTSKKGKEQSEGIAYQWNYMVENQSAFVSFLLISHGYCIMCEHLSLNERRSTAALACVFYLTLVGYKASVPYFTVLLLLNYFISFYVIFHHISQNLLVLREQLSIIENEDVRAMHDAVYKKYIMFK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02817 471 Gene3D Phosphatidylinositol (PI) phosphodiesterase 196 392 IPR017946 GO:0006629|GO:0008081
Vifa6g02817 471 SUPERFAMILY PLC-like phosphodiesterases 224 369 IPR017946 GO:0006629|GO:0008081
Vifa6g02817 471 PANTHER UNCHARACTERIZED 213 374 - -
Vifa6g02817 471 Gene3D alpha/beta hydrolase 10 189 IPR029058 -
Vifa6g02817 471 MobiDBLite consensus disorder prediction 80 124 - -
Vifa6g02817 471 MobiDBLite consensus disorder prediction 27 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02817 Vifa-Chr6 946267690 946271464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02817 1 170 Carbohydrate Esterase AT3G27320 55.814 7.87e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02817 - - gmx:100807313 290.426