Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02806 ATGTTGATTAAAAATAAATTGGGTATTGTGTTGATAGTGATTCTTAAGATGAAACATTTTTATATTTTCAAGTTTGGATATATTTATTGGAAGGAATTAATTGGTGTCATGGATCAGGTAACAAGCAAGGGTAGTGGTGAAATGTTGGATCATGTTGAGAAAGGGGTTAATGAGAGTTTGAGTAATTTAGTTGAAGGAGTTGCAACTGATGCAGGAGCTGGACATAGCTTGGGTGGTAGGGTTAGTTCATGCGGTGAAGATCGGAATTCAGAAGAGTTGTGCAATGATCTTGGGCTGAATGAGGAGCTAAAGGAGAGACCTTTAGAAGTTAAGGATCGGAATCCAAACTTTGGTGGTGATCCTGGAAAAATCAACGATGGATTGCGCGGGGTTGATCAAGGGACTAGTTATAATTCATGTGATTCGGTTAATGGAGAAGCATTTGAGACCCGTGTTGTAATAGATTCTTCCGCTCAGGTTGAGTCTGGCGATGGAGATAGCAGAAAATTAGAAGCTAAAACTAATGAATCAAGGTTGAACAAGCTATCAATTAAAGCGACGAAAGGTGTGTCTGAGACTGATAAAAATTCGTGTGTGATTGATGTGAATTGTGGCAGCGGCAAAGATTTTAGTGAGAATTTGGATGGGGAAACGATTTGTAGGATTTGCCATCTTGCATCTGGGCAACCATTAGAAGAAACTGCTGTTGGAACTCCAAATAGTGCTGATGATAAAACAGGTTTGATTATGCTTGGTTGTGCATGTAAATCTGAGCTAGGAATTGCACACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGCGAAATATGTGGTGAGACTGCAAAGAATGTTCCCGATGTTATTAATAATGGATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGACAGTGGCAGCACTAGCAACTCACCCCGTGGATTGGTTGGATGCTGGCGCGGGCAACCATTCTGCAACTTCTTGATGGCGTGCCTTGTAATAGGTTTTGTTCTACCATGGTTCTTTCGTGTAAAAATGTTCTAG 1056 0.4062 MLIKNKLGIVLIVILKMKHFYIFKFGYIYWKELIGVMDQVTSKGSGEMLDHVEKGVNESLSNLVEGVATDAGAGHSLGGRVSSCGEDRNSEELCNDLGLNEELKERPLEVKDRNPNFGGDPGKINDGLRGVDQGTSYNSCDSVNGEAFETRVVIDSSAQVESGDGDSRKLEAKTNESRLNKLSIKATKGVSETDKNSCVIDVNCGSGKDFSENLDGETICRICHLASGQPLEETAVGTPNSADDKTGLIMLGCACKSELGIAHSHCAEAWFKIKGNRLCEICGETAKNVPDVINNGFMEEWCESGFIDSGSTSNSPRGLVGCWRGQPFCNFLMACLVIGFVLPWFFRVKMF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02806 351 SMART ringv_2 219 283 IPR011016 GO:0008270
Vifa6g02806 351 PANTHER ZINC FINGER, RING-CH-TYPE 112 351 - -
Vifa6g02806 351 SUPERFAMILY RING/U-box 217 285 - -
Vifa6g02806 351 ProSiteProfiles Zinc finger RING-CH-type profile. 212 289 IPR011016 GO:0008270
Vifa6g02806 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 291 IPR013083 -
Vifa6g02806 351 Pfam RING-variant domain 240 282 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02806 Vifa-Chr6 945254901 945258174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02806 146 347 C3H Transcription Factor Family AT5G05830 33.981 4.70e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02806 - - gmx:100791129 429.483