Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02800 ATGAAACTCTTTTTCAGATTCTTGATTCTTCTAGCTCTATTTTCATTAGCAGAATCTTCATGCAACAGTGAAGACCAAACCTCAATTTCAAAGGCTTTCAAATCTGTCTCTGGCTTCAACTCTTCAACTTTATTCCAAACAAGACGCTCCTCCATCTGTTCTAACTTTCATATCACTAAAATCATTCTTCCCTCCAAAAATCTAAGCGGAACAATTTCATGGGCTTATCTCAAAAACATGTCGAAGCTACAAATTCTTGATCTCTCTGGAAATTCCCTACAAGGCCACATACCAAGCTGGTTTTGGTCTAGCTTTTCATCCTTAGTAGAAATAAACCTCTCAAGAAACAGATTCGGAGGAAGCATCACTGTTGAGATGAATAACACATCAACAATGGAAAACCTCAATCTCTCACACAACAGGTTCAGTAATTTAGTTCAACTTTCCAACTTCCAAAACCTTAAAATCCTCGACCTTTCACACAATAACCTAAGAACACTTCCTTTTGGTTTTCAAAATCTCACCAAGTTACAACATCTCGACCTTTCAAGCTGCAATCTCAAAGATAACATAAAACCAATCTCTTCTTTAAACTCACTTCGTTACCTAGACTTATCAAACAACAATTTAACCGGAAATTTCCCTTCGGATTTTCCGGTAATTAACAATCTCAAATTCCTCAACATTTCAAACAACAACTTCTTCACCTTTAACAAACCAAACCAAAATCCAAAACAACTCATCATCATTCATAGAAAACAAACCAAACCAAAAACAAAAAGACTCATCCTTGCAGTGTATTCTACACTGTCCACACTTGCTATTGCTCTTCTTTTCATTTGGGTTATCCGTATTATTCACAAAAAGAGAAAACAACGTTCTAAGAAAAAGAAATGGACAATCTCGATACCAACCATGAGGAACACGAAGGTGGACAAAACAGGACCGTTTGAGTTTGAAACAGAGTCAGGCTCAACATGGGTTGCAGATTTAAAAGAACCAACATCTGCACCCGTGGTGATGTTCGAGAAGCCATTGATGAACTTGACTTTCAAGGATCTCATTGTTGCCACGTCACATTTCGGGAAAGAGTCGCAGCTGGCAGAAGGAAGATGTGGGCCAGTGTATTGGGCAGTGTTACCCGGTGAAATCCATGTGGCGATCAAGGTTCTTGAGCATGTCAGAGACGTTGATTATGATGAATCTGTTGCCATGTTTGTTGGGTTATCGAAGGTGAAGCATCCCAACTTGTTGACTCTCTCAGGTTACTGTATTGCAGGTAAGGAGAAGCTAGTGATATATGAGTTTATGGCCAACGGCAATTTAGGTCGATGGCTACATGAGCTTCCTACCGGAGATACCAACATCGAGGATTGGACTGACGACACATGGGAGTTCCAAAACGGCATTGTCGAAGCATCCCCGGAAAAGATGGCGTGGGAGACACGCCATCTTATCGCGGTGGGGATAGCGCGTGGCCTCGCGTTTCTCCACCACGCGGGCTCAAAACCTATTGTGCACGGCCACCTCGTCACCTCCAACATTTTACTCACGGATAATTTCGAGCCAAGAATCTCTGATTTTGGATTACAAATCGACTCGAGTCCCAATGGTGGTACTAAGGATGATGTGTATTGTTTTGGAGTGGTGTTGATGGAGCTTCTGACTGGAAAGATTGGCACGACGGAGATAATTGTGGCGGCTAGAAAGGCGGCGAAGGAAGGACAACATGTTAAAGTGCTTGATGAGAGGTTGCGACATGAAGATGATTCAATGGTGAGCGAGATGGTGGAGAGTCTCATGATTGCTTTCTTGTGCACGGCTGACTTGCCTTCCAAGAGACCCACCATGCAACAAGTTTTGGGCTTACTCAAAGATGTTCATCCTCATGAACCTCTAGTTTTAATTTGA 1911 0.4197 MKLFFRFLILLALFSLAESSCNSEDQTSISKAFKSVSGFNSSTLFQTRRSSICSNFHITKIILPSKNLSGTISWAYLKNMSKLQILDLSGNSLQGHIPSWFWSSFSSLVEINLSRNRFGGSITVEMNNTSTMENLNLSHNRFSNLVQLSNFQNLKILDLSHNNLRTLPFGFQNLTKLQHLDLSSCNLKDNIKPISSLNSLRYLDLSNNNLTGNFPSDFPVINNLKFLNISNNNFFTFNKPNQNPKQLIIIHRKQTKPKTKRLILAVYSTLSTLAIALLFIWVIRIIHKKRKQRSKKKKWTISIPTMRNTKVDKTGPFEFETESGSTWVADLKEPTSAPVVMFEKPLMNLTFKDLIVATSHFGKESQLAEGRCGPVYWAVLPGEIHVAIKVLEHVRDVDYDESVAMFVGLSKVKHPNLLTLSGYCIAGKEKLVIYEFMANGNLGRWLHELPTGDTNIEDWTDDTWEFQNGIVEASPEKMAWETRHLIAVGIARGLAFLHHAGSKPIVHGHLVTSNILLTDNFEPRISDFGLQIDSSPNGGTKDDVYCFGVVLMELLTGKIGTTEIIVAARKAAKEGQHVKVLDERLRHEDDSMVSEMVESLMIAFLCTADLPSKRPTMQQVLGLLKDVHPHEPLVLI 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02800 636 Gene3D Ribonuclease Inhibitor 22 127 IPR032675 -
Vifa6g02800 636 FunFam Calmodulin-binding receptor kinase CaMRLK 130 238 - -
Vifa6g02800 636 Pfam Protein tyrosine and serine/threonine kinase 364 533 IPR001245 GO:0004672|GO:0006468
Vifa6g02800 636 Gene3D Ribonuclease Inhibitor 128 243 IPR032675 -
Vifa6g02800 636 SMART LRR_typ_2 197 220 IPR003591 -
Vifa6g02800 636 SMART LRR_typ_2 80 104 IPR003591 -
Vifa6g02800 636 SMART LRR_typ_2 151 173 IPR003591 -
Vifa6g02800 636 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 46 625 - -
Vifa6g02800 636 SUPERFAMILY L domain-like 46 235 - -
Vifa6g02800 636 FunFam Putative LRR receptor-like serine/threonine-protein kinase 322 436 - -
Vifa6g02800 636 Gene3D Transferase(Phosphotransferase) domain 1 437 538 - -
Vifa6g02800 636 ProSiteProfiles Protein kinase domain profile. 361 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02800 636 SUPERFAMILY Protein kinase-like (PK-like) 335 622 IPR011009 -
Vifa6g02800 636 Pfam Leucine Rich Repeat 199 218 IPR001611 GO:0005515
Vifa6g02800 636 Gene3D Phosphorylase Kinase; domain 1 321 436 - -
Vifa6g02800 636 Pfam Leucine rich repeat 131 187 IPR001611 GO:0005515
Vifa6g02800 636 Pfam Leucine rich repeat 59 118 IPR001611 GO:0005515
Vifa6g02800 636 PRINTS Leucine-rich repeat signature 154 167 - -
Vifa6g02800 636 PRINTS Leucine-rich repeat signature 197 210 - -
Vifa6g02800 636 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Vifa6g02800 636 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Vifa6g02800 636 Gene3D Transferase(Phosphotransferase) domain 1 539 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02800 Vifa-Chr6 943666821 943673409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02800 58 627 Receptor kinase-like Gene Family AT5G07280 32.091 3.65e-74 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vifa6g02800 PK_Tyr_Ser-Thr 1.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02800 - - gmx:100788556 833.558