Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02797 ATGTCAGATGGATATGAGAATGAGAAAAGTGGGAAGAGTACTACTGAGGAACAAGCTGGTGAGGATACTTCCATGGGATCTTCACAGCATAACAACTTTGATTTGAATGAAGAAGCTAGTAGTGATCAAGATAATGCTAACAATATTGAGAATGATGAACTGAATGGTGATGACGATGACAATGATGATGATGATGATGAGAAAGGAAAGGATGATGATGAAGGGACTTCGAGTTCAACAAAAAATAGAAGTAGTGGATCAAATGAAAGAAGAAATGGTGTAAGACAATATGTTCGATCAAAGATGCCTAGGCTTAGATGGACTCCTGATCTTCATCATTCATTTGTGCATGCTGTTGAAAGGCTTGGAGGCCAAGAGAGAGCAACACCTAAGCTGGTGCTTCAACTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTACCGGAGCAAGAAACTTGATGATGCTGGACAAGTACTAAGTCCAACACAAAGAGATTAA 519 0.3969 MSDGYENEKSGKSTTEEQAGEDTSMGSSQHNNFDLNEEASSDQDNANNIENDELNGDDDDNDDDDDEKGKDDDEGTSSSTKNRSSGSNERRNGVRQYVRSKMPRLRWTPDLHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDDAGQVLSPTQRD 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02797 172 Pfam Myb-like DNA-binding domain 105 155 IPR001005 -
Vifa6g02797 172 MobiDBLite consensus disorder prediction 1 97 - -
Vifa6g02797 172 MobiDBLite consensus disorder prediction 51 71 - -
Vifa6g02797 172 MobiDBLite consensus disorder prediction 79 93 - -
Vifa6g02797 172 MobiDBLite consensus disorder prediction 1 16 - -
Vifa6g02797 172 FunFam Myb family transcription factor 101 159 - -
Vifa6g02797 172 Gene3D - 102 159 - -
Vifa6g02797 172 MobiDBLite consensus disorder prediction 17 50 - -
Vifa6g02797 172 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 158 IPR006447 GO:0003677
Vifa6g02797 172 SUPERFAMILY Homeodomain-like 101 157 IPR009057 -
Vifa6g02797 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 159 IPR017930 -
Vifa6g02797 172 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 80 161 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02797 Vifa-Chr6 942936862 942938812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02797 92 164 G2-like Transcription Factor Family AT2G42660 76.712 5.91e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa6g02797 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02797 - - mtr:11419043 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02797 6 942936862 942938812 Vifa6g02797 6 942936862 942938812 ECH