Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02796 ATGGAATGCATATTCGACCGGTTTGGATTTTGGCTCAGAGTTTGTGTTGGCTTGATTTCTCTTTGGGGAGTTCAACGGTGTTGGTCTCTGAACGATGAAGGAATTGCTTTGTTGGAATTTCGAGTAAGAATAACTTATGATCCTTATGGTGCTCTGGGAAATTGGAATCCAAATGATTCCGACCCTTGCAACTGGTTGGGTGTTCGTTGCGTTGATGGTAAAGTGCAAACACTGGACTTAAATGGGCTATCATTGGAAGGGACATTAACTCCTCATCTTGGGAAGCTTAATCACTTGAAATCTATTCTGTTACGCAAGAACAATTTTTCTGGTGCCATTCCTAAAGAACTTGGAGATCTAGACAATCTGGAGTTGTTGGATTTAAGGGAGAATAACTTGATTGGAAATATCCCCGCAGAAACCGGGAGGATGTTGTTAAAACAATTATTGGTTCATGACAATAAATTTGAAGGTAGCGGTTCTCAAGAGCTCGACAACATGGGACTGCCTTCTAAATCGCTAGTTATTGACAACTATTCGTCTCCCCTGACAAGTTTGTTTCAGTGCAAGAATAGAAAGTTTGCACACTGCGCGTGGTATAGAGATCTCAAGCAATGGAACAAGGCAGAGTTTTTGGCTGTTCCAATCAAAGGAGCACTTACAAGATACCTTAATGCCATGGCTCTGCCACTGTTCAATCTAGGAAAGGCTACCTCTCATGGCTACGAGGAGAATTACTGTGCTGGTCTTCCTAGTTCTGGCGAGTCGGAGATTGGCTCAAATTTATCAGATCTAATCAGTTCTGCACGTCGTAGGTTGCTTGATCAGTCCAGTAACCTCGCAGCGGCACCTTATAGTGGCGGACCCGTTATACAGATCAGTTATCTTCCAATCACCATAAGTAGTGGATCTTTCTCGGCTGTGCCAGATCCCAAGAAGAAACAAAATCAGTCCCTTGCACCACTCGATTCATCTGCTGGTTCTCAAACAAGTGAACAAAATTCATCTAATGGTGCTCCAAGAAAACTCTGGAAATATATTATTATCTTCTCTGGTGTCGCTATCTCTGTTATTTTTATTGCGATCATACTTTGCGTCTTGCGAAAACGAGCTGCAAAAGCTATAAAGCCCTGGAAGACAGGAATAAGTGGACAGTTGCAAAAGGCATTTGTAACAGGGGTCCCCAAGTTGAATCGATCAGAGTTGGAGACAGCATGTGAAGATTTCAGCAATATTATTAACAGTTTTGAGAAGTGCACCGTATATAAAGGAACACTGTCCAGTGGAGTCGAGATTGCTGTTGATTCTACTATTGTTAATTCTACTGAGGATTGGTCAAAGAACATGGAGATAGCCTACAGGAGAAAGATTGCTGCTCTATCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGTTACTGTGATGAAGACGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCAAACGGAAGCTTATATGAGCATCTACATGTTAAGGACGTTGAACACCTTGATTGGAGTGCAAGGATGAGGGTTGCTATGGGCACAGCTTATTGTCTTCATTACATGCACCATGATCTGAACCCACCAGTCTCTCATTCCAATCTTAATTCAGTTTCAATATTGTTAACAGATGACTTTGCGGCTAAGATTTCAGAGATCAGTTTTGGCACTAATAGATTTCCTACCAGCACAACTGGAGACGATTCTAAGAAATCCGAGTTGCCACCCCATCAAGGTCCTGAAACCGATGTCTATAACTTTGGAATACTGTTGCTCGAAATCATTTCTGGGAAACTACCTTATTCTGAAGAACAAGGCCATCTTGTGAATTGGGCTTCCGAGTTCTTGAATGATAAGCGAAACATCGGCTGTTTGATCGATCCAACGCTCGAGTCATTCAAAGACAATGAACTTGATGTGATATGTGAGGTAATAAAAGAATGTGTTCAATCTGATCAAAGGTTAAGGCCAACAATGAAAGAAATAATTTGCAAATTGAGGGAAGTGCTTAATATAATGCCCGAGCAAGCCGTGCCGAGACTTTCTCCACTCTGGTGGGCCGAATTGGAAATCTTATCAGTGGAGGCGACATAA 2106 0.4193 MECIFDRFGFWLRVCVGLISLWGVQRCWSLNDEGIALLEFRVRITYDPYGALGNWNPNDSDPCNWLGVRCVDGKVQTLDLNGLSLEGTLTPHLGKLNHLKSILLRKNNFSGAIPKELGDLDNLELLDLRENNLIGNIPAETGRMLLKQLLVHDNKFEGSGSQELDNMGLPSKSLVIDNYSSPLTSLFQCKNRKFAHCAWYRDLKQWNKAEFLAVPIKGALTRYLNAMALPLFNLGKATSHGYEENYCAGLPSSGESEIGSNLSDLISSARRRLLDQSSNLAAAPYSGGPVIQISYLPITISSGSFSAVPDPKKKQNQSLAPLDSSAGSQTSEQNSSNGAPRKLWKYIIIFSGVAISVIFIAIILCVLRKRAAKAIKPWKTGISGQLQKAFVTGVPKLNRSELETACEDFSNIINSFEKCTVYKGTLSSGVEIAVDSTIVNSTEDWSKNMEIAYRRKIAALSRVNHKNFTNLIGYCDEDEPFTRMMVFEYAPNGSLYEHLHVKDVEHLDWSARMRVAMGTAYCLHYMHHDLNPPVSHSNLNSVSILLTDDFAAKISEISFGTNRFPTSTTGDDSKKSELPPHQGPETDVYNFGILLLEIISGKLPYSEEQGHLVNWASEFLNDKRNIGCLIDPTLESFKDNELDVICEVIKECVQSDQRLRPTMKEIICKLREVLNIMPEQAVPRLSPLWWAELEILSVEAT 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02796 701 Gene3D Ribonuclease Inhibitor 29 213 IPR032675 -
Vifa6g02796 701 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vifa6g02796 701 Gene3D Transferase(Phosphotransferase) domain 1 490 682 - -
Vifa6g02796 701 MobiDBLite consensus disorder prediction 309 338 - -
Vifa6g02796 701 FunFam Nuclear pore complex protein NUP107 30 184 - -
Vifa6g02796 701 Pfam Protein tyrosine and serine/threonine kinase 419 670 IPR001245 GO:0004672|GO:0006468
Vifa6g02796 701 ProSiteProfiles Protein kinase domain profile. 407 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02796 701 SMART serkin_6 416 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02796 701 SUPERFAMILY L domain-like 41 168 - -
Vifa6g02796 701 Gene3D Phosphorylase Kinase; domain 1 383 489 - -
Vifa6g02796 701 FunFam Inactive receptor-like serine/threonine-protein kinase 381 489 - -
Vifa6g02796 701 MobiDBLite consensus disorder prediction 565 584 - -
Vifa6g02796 701 SUPERFAMILY Protein kinase-like (PK-like) 392 670 IPR011009 -
Vifa6g02796 701 PANTHER PROTEIN MALE DISCOVERER 2 18 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02796 Vifa-Chr6 942249774 942253091 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02796 85 673 Receptor kinase-like Gene Family AT5G56040 28.189 7.35e-48 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa6g02796 PK_Tyr_Ser-Thr 6.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02796 - - gmx:100808098 996.497