Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02795 ATGGCAGGAGTAGCAGCTCTCAAGAAGAACAACTCATTCCACAAGAAAGAGAATCCAAATCTTCTCTTAGGCCGTTTCGAATTAGGAAAACTCCTTGGCCATGGAACTTTTGCCAAGGTCCACCTAGCCAAAAACCTCAAAACAGGTGAAGCAGTAGCTATAAAGATCATAAGCAAAGACAAAATCCTTAAAAGTGGTTTAGTTTCACACATCAAACGTGAAATCTCCATTCTCCGCCGTGTCCGCCACCCCAACATCGTGCAGCTCTTTGAAGTCATGGCGACAAAGACAAAGATCTACTTTGTAATGGAATATGTACGAGGTGGAGAGCTTTTCAATAAGGTTGCTAAAGGTAGGTTGAAAGAAGAGGTTGCTAGGAAGTATTTTCAACAGTTAATATGTGCGGTTGGGTTTTGTCATGCTAGAGGTGTTTTTCATAGAGATATAAAACCTGAAAATTTGTTGTTGGATGAAAATGGTAACCTTAAAGTTTCCGATTTTGGTTTGAGTGCTGTGTCGGATGAAATAAAGCAAGATGGGTTGTTTCATACTTTTTGTGGCACACCTGCTTATGTTGCTCCTGAGGTTTTGTCTAGAAAAGGTTATGATGGTGCTAAGGTTGATATTTGGTCTTGTGGTGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTGCCTTTTCATGATCCTAATAATGTTATGGTTATGTATAAGAAGATTTATAAAGGTGAGTTTAGGTGTCCAAGATGGTTTTCTCCTGAACTTGTTAACCTTCTTACTAGGCTTCTTGATACTAAACCTCAAACTAGGATCTCGATCCCCGAGATTATGGAGAATCATTGGTTTAAGATAGGTTTTAAGCATATTAAGTTTTATGTTGAGGATGATGTTGTTTGTGATATTGATTCTCTTGATCTTGATGGTAATGATGGTAATGTTGATAAGAAGGTGCTAAACATCGATGAACATCGCGATGAAGTATTGGAATCGGTATCAGAATCAGAATGGGATACTGAGGTTGTGAATAGAAGGAAGAATCGTCAGCTTGGTTCGTTGCCACGGCCTGCGAGTTTGAATGCTTTTGACATTATATCGTTTTCGCAAGGCTTTGATCTTTCTGGATTGTTTGAGGAAAAGGGCGATGAGGCAAGGTTTGTTTCTGGTGCGTCAGTGTCAAAGATTATGATGAAATTGGAGGAAGTTGCTCAGTTGGTTAGTTTCAAAGTGAGGAAGAGAGATTGCAGGGTTAGCTTCGAGGGTTCGAGAGAAGGGGTAAAAGGGCCATTGAGTATTGCTGCTGAGGTATTCGAGTTAACACCTTCTTTGGTTGTTGTTGAAGTGAAGAAAAAAGGAGGGGATAAAGTTGAGTATGATAGATTTTTAAACACTAAATTGAAGCCCGCTTTGCATAGTTTAACCATAGAGGAATCTGCAGGTTCTTCATGTCAAACTACACCAGATGAAACATTGCAACAACGCGCATTTTCCGATTCTGCCATTGACAAACATTCAGATAGTATCGAATCTCTGAACTTCGATTCCTGA 1542 0.3949 MAGVAALKKNNSFHKKENPNLLLGRFELGKLLGHGTFAKVHLAKNLKTGEAVAIKIISKDKILKSGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLICAVGFCHARGVFHRDIKPENLLLDENGNLKVSDFGLSAVSDEIKQDGLFHTFCGTPAYVAPEVLSRKGYDGAKVDIWSCGVVLFVLMAGYLPFHDPNNVMVMYKKIYKGEFRCPRWFSPELVNLLTRLLDTKPQTRISIPEIMENHWFKIGFKHIKFYVEDDVVCDIDSLDLDGNDGNVDKKVLNIDEHRDEVLESVSESEWDTEVVNRRKNRQLGSLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSGASVSKIMMKLEEVAQLVSFKVRKRDCRVSFEGSREGVKGPLSIAAEVFELTPSLVVVEVKKKGGDKVEYDRFLNTKLKPALHSLTIEESAGSSCQTTPDETLQQRAFSDSAIDKHSDSIESLNFDS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02795 513 ProSiteProfiles Protein kinase domain profile. 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02795 513 CDD CIPK_C 358 468 - -
Vifa6g02795 513 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 458 - -
Vifa6g02795 513 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02795 513 MobiDBLite consensus disorder prediction 494 513 - -
Vifa6g02795 513 Gene3D Transferase(Phosphotransferase) domain 1 16 344 - -
Vifa6g02795 513 Gene3D Kinase associated domain 1, KA1 354 473 - -
Vifa6g02795 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vifa6g02795 513 FunFam Non-specific serine/threonine protein kinase 354 472 - -
Vifa6g02795 513 FunFam Non-specific serine/threonine protein kinase 16 330 - -
Vifa6g02795 513 ProSiteProfiles NAF domain profile. 352 376 IPR018451 GO:0007165
Vifa6g02795 513 SUPERFAMILY Protein kinase-like (PK-like) 22 282 IPR011009 -
Vifa6g02795 513 FunFam Non-specific serine/threonine protein kinase 17 105 - -
Vifa6g02795 513 Pfam NAF domain 354 410 IPR004041 GO:0007165
Vifa6g02795 513 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Vifa6g02795 513 SMART serkin_6 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02795 513 MobiDBLite consensus disorder prediction 497 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02795 Vifa-Chr6 942247073 942248614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02795 21 488 CBL-interacting serine-threonine protein kinases AT4G18700 73.134 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa6g02795 Pkinase 5.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02795 - - gmx:100807567 727.628