LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g02790	ATGGCGTACACCAAGGAACGTGAAAACTTCGTCTACATCGCCAAGCTCGCTGAACAAGCAGAACGCTATGATGAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAGATGTTGAGTTGACTGTAGAGGAGAGAAACCTTCTGTCAGTTGGGTACAAGAATGTAGTGGGTGCTCATAGGGCTTCATGGAGGATTCTATCGTCTATTGAGCACAGGGAAGATGCGAAAGGGAATGATGTGAGTGTGAAGAGGATAAGGGAGTATAGAAACAAGGTCGAATCTGAGTTGTCGAATATTTGCAGTGATATCATGACTATTATAGATGATCACCTTATTCCTTCATCCTCTGCTGGTGAATCTAGTGTCTTTTTCTATAAGATGAAAGGGGATTATTATCGGTATTTGGCAGAGTTTAAGAATGGTGACGAGAGGAAAGAGGCTTCTGATCATTCTATGGAAGCATATCAGACAGCTTCTACTGCAGCCGAAGATGAGTTAGCTCCCACACATCCCATTCGATTGGGGTTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGGGCATGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGATACTCTGAGTGAGGAGTCTTACAAAGACAGCACATTGATTATGCAGCTTCTAAGGGACAACCTCACATTGTGGACTTCAGACATCCCTGAAGAAGGAGATGAGGAACAAAAGGTTGAGTCTTCTCGAGCTGGTGGAGATGAAGATGAATAG	780	0.4321	MAYTKERENFVYIAKLAEQAERYDEMVEAMKNVAKLDVELTVEERNLLSVGYKNVVGAHRASWRILSSIEHREDAKGNDVSVKRIREYRNKVESELSNICSDIMTIIDDHLIPSSSAGESSVFFYKMKGDYYRYLAEFKNGDERKEASDHSMEAYQTASTAAEDELAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEEGDEEQKVESSRAGGDEDE	259

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g02790	259	Coils	Coil	13	33	-	-
	Vifa6g02790	259	PIRSF	14-3-3	1	249	IPR000308	-
	Vifa6g02790	259	FunFam	14-3-3 protein epsilon	2	248	-	-
	Vifa6g02790	259	MobiDBLite	consensus disorder prediction	236	259	-	-
	Vifa6g02790	259	Pfam	14-3-3 protein	14	235	IPR023410	-
	Vifa6g02790	259	MobiDBLite	consensus disorder prediction	245	259	-	-
	Vifa6g02790	259	Gene3D	-	1	250	IPR036815	-
	Vifa6g02790	259	PRINTS	14-3-3 protein zeta signature	119	141	IPR000308	-
	Vifa6g02790	259	PRINTS	14-3-3 protein zeta signature	39	68	IPR000308	-
	Vifa6g02790	259	PRINTS	14-3-3 protein zeta signature	181	207	IPR000308	-
	Vifa6g02790	259	PRINTS	14-3-3 protein zeta signature	208	237	IPR000308	-
	Vifa6g02790	259	PRINTS	14-3-3 protein zeta signature	154	180	IPR000308	-
	Vifa6g02790	259	PRINTS	14-3-3 protein zeta signature	88	112	IPR000308	-
	Vifa6g02790	259	SUPERFAMILY	14-3-3 protein	6	237	IPR036815	-
	Vifa6g02790	259	PANTHER	14-3-3 PROTEIN	7	238	IPR000308	-
	Vifa6g02790	259	SMART	1433_4	7	248	IPR023410	-
	Vifa6g02790	259	ProSitePatterns	14-3-3 proteins signature 1.	45	55	IPR023409	-
	Vifa6g02790	259	Coils	Coil	258	259	-	-
	Vifa6g02790	259	ProSitePatterns	14-3-3 proteins signature 2.	217	236	IPR023409	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g02790	Vifa-Chr6	939757931	939760415	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g02790	1	259	14-3-3 family	AT2G42590	76.046	5.60e-148	413

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g02790	K06630		-	gmx:100807980	459.144