Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02783 ATGGCATCTCCCGTCGGAGCTTATTCATCTGGTACAAGCTCTCTTCAAAACTCTGGATCTGGATCAGAGGGAGATATGAATATGATTCCCATGCAGGTGAATATAACAGATCAAAAGAAGAGGAAGAGAATGCAATCAAATCGAGAATCAGCACGAAGATCAAGGATGAAGAAACAGCAGCACATGGAAGGTCTTACTGCACAAATCGAAGAGCTGAAAAAAGAGAATAATCAAATAACAGCAAACGTAGGGATAACTACTCAGATGTACATGAACGTTGAATCTGAGAATGCAATTCTTAGGGTTCAGATGGCTGAACTAAGCAACAGATTGCAATCACTCAATGATATTATCCACTACATTGAATCAAGTAATTCACTGTTTCAGGAAACGGATCAGTTGTTCAATGATTGTGGATTCTTGGAAACGTGGAACACTTTTCCGGTTAATCAAACGATTATGGCCTCTAATGATATGTTGATGTATTGA 489 0.3885 MASPVGAYSSGTSSLQNSGSGSEGDMNMIPMQVNITDQKKRKRMQSNRESARRSRMKKQQHMEGLTAQIEELKKENNQITANVGITTQMYMNVESENAILRVQMAELSNRLQSLNDIIHYIESSNSLFQETDQLFNDCGFLETWNTFPVNQTIMASNDMLMY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02783 162 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 42 57 IPR004827 GO:0003700|GO:0006355
Vifa6g02783 162 Pfam Basic region leucine zipper 36 82 IPR004827 GO:0003700|GO:0006355
Vifa6g02783 162 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 37 83 IPR004827 GO:0003700|GO:0006355
Vifa6g02783 162 MobiDBLite consensus disorder prediction 1 34 - -
Vifa6g02783 162 Coils Coil 55 82 - -
Vifa6g02783 162 Gene3D - 37 91 - -
Vifa6g02783 162 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 157 - -
Vifa6g02783 162 FunFam BZIP transcription factor 37 88 - -
Vifa6g02783 162 CDD bZIP_plant_GBF1 40 91 IPR045314 GO:0003700|GO:0006355
Vifa6g02783 162 MobiDBLite consensus disorder prediction 1 63 - -
Vifa6g02783 162 SUPERFAMILY Leucine zipper domain 39 93 IPR046347 GO:0003700|GO:0006355
Vifa6g02783 162 MobiDBLite consensus disorder prediction 36 60 - -
Vifa6g02783 162 Coils Coil 90 117 - -
Vifa6g02783 162 SMART brlzneu 35 99 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02783 Vifa-Chr6 938296102 938296590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02783 35 162 bZIP Transcription Factor Family AT4G34590 50.365 9.36e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa6g02783 bZIP_2 1.7e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02783 K25786 - gmx:778139 174.866