Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02757 ATGGATTCCTCCTTAAACACACTCTCATTGAATGATTGCTGCACCATCTATATTCACTACACTCACTTAACTATTTCTTCTACATCCAATGACCCAAATAACCTTATTTTTAAATTAATAACACCCATCTTCAACAAATTCGAGATTCCTCTTGAAACATTATACAACAACACTGATATTAACAACCAATCTTTACTCGAAACCTTTCATGCCATACCTAGTTCTGTAATTGACACCGTTCTACGTGGTTTGAGAGATTTCGCTACAAGAATAATCCTACATGGAAAATCGGAGGAGATGCATATATTGCTTCGAAGGGTTAGTTCACGCATAGGACAACAAGATCAACTTGATCAAAATGATCAACAAATTGTGGGTTTATCATCAAACGTGAATGTTGATATTACTTCAACTTCTAAGGATCAATGTTCGATTTGTTTCGAAGAGTTTTGCGACGAATCGCAAATTCATCTCTTTTATACAAAGTGCTCTCATGTTTTTCATAAAGAATGTATTGCTGAATGGATCTTTAAATGCATGAGTCGTGCACGCATTTATACTTGTCCATTGTGCAGAGGTGAGATGATGTGA 591 0.3553 MDSSLNTLSLNDCCTIYIHYTHLTISSTSNDPNNLIFKLITPIFNKFEIPLETLYNNTDINNQSLLETFHAIPSSVIDTVLRGLRDFATRIILHGKSEEMHILLRRVSSRIGQQDQLDQNDQQIVGLSSNVNVDITSTSKDQCSICFEEFCDESQIHLFYTKCSHVFHKECIAEWIFKCMSRARIYTCPLCRGEMM 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02757 196 SMART ring_2 143 191 IPR001841 -
Vifa6g02757 196 Pfam Ring finger domain 141 192 IPR001841 -
Vifa6g02757 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 196 IPR013083 -
Vifa6g02757 196 ProSiteProfiles Zinc finger RING-type profile. 143 192 IPR001841 -
Vifa6g02757 196 PANTHER RING ZINC FINGER PROTEIN-RELATED 126 193 - -
Vifa6g02757 196 SUPERFAMILY RING/U-box 142 194 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02757 87 196 C3H Transcription Factor Family AT5G15790 33.636 6.72e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02757 - K15711 mtr:11411367 115.546