Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02743 ATGGATGCTGCGCCGCTCTCCGCATCCGCGGCCGCAGGAAATGGAGGAGGACCGGCGCCGTTTCTCCAGAAGACGTATGACATGGTGGACGATTCCACCACTGACGAGATCGTTTCCTGGGGCTCTAACAACTGCAGCTTCATCGTTTGGAACAATACCGAATTCGCTCGCCTTCTCCTCCCAACCTATTTCAAGCACAGCAATTTTTCCAGCTTCATCCGGCAGCTCAACACCTATGGATTCCGAAAAGTACATTCTGAGCGTTGGGAGTTTGCTAATGAAGAATTTATAAAAGGTCAAAAGCATCTTCTGAAGAATATACACCGCAGGAAACCTATACACAGTCATAGTCATCCTCCGGTTTCTGTTGTGGATCCTGAAAGGGCAGCATTTGCAGAGGAACTCGATAAACTCTCGCGCGAAAAAAATTCTCTTGAATCCAATCTCTTAAACTACAAACATCATCAATCAACAACAAAGCTTCAGATGGAAGATTTTCACCATCGATTGGATGGTATAGAGAAGAGGCAGATATATTTGCTGAACTTTTTTGAGAAGGCTCTTCAGAATCCTTCTTTTGTTGATCATCTTTCGCGCAAAATTGAATCCATGGATTTAGCGGCATATAATAAGAAAAGGCGACTGCCTCAGATTGATCATGTGCAGCCTGTTGCTGAAGCTGTCTCAGATATGAACCTGGTATCAGGTAGCACACAGGGTTCAAACGAAGGCGAGGAAAGCATGCAGAAGAACCTGTCTGAAGGAGAACTGAATGGAATGCAGACAAGAACTGGCCTTGCTTTTGCACCTGCAACGCTAGAGCTTGCAGATACTGGGACATCTTTTACTTTTAATATGGATTCGTGTTTATCACGAAGAGCAACAACTACCGAGAGCCCAAATCTTCACTCCCTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTCCATTGGAATTCAACAGGAATTCATACTCGGCCAGATCACCCCAGATAGATTGTCAAGAAATTGCCGAATCAATAGTTAATGCCAATGGTAAAGAATCAGAAAATGGAGTTTCCTTAAACCGAGTTGTGGCCAACGAGGTTATCAATTTAGCTTCACCGCAGGAAGCTTCAGGTAACGGACAAGTCAAACCAGCTGCTCCACGTCGAGTGAATGACGTCTTTTGGGAACAATTCCTTACCGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGCAAATCCATATGACGAGCAAGAGGAAGGGCGGTCAGTTCATAGAATCTCTAGTAACTCCAAGAACATGGATAATCTCACACTCTGA 1356 0.4454 MDAAPLSASAAAGNGGGPAPFLQKTYDMVDDSTTDEIVSWGSNNCSFIVWNNTEFARLLLPTYFKHSNFSSFIRQLNTYGFRKVHSERWEFANEEFIKGQKHLLKNIHRRKPIHSHSHPPVSVVDPERAAFAEELDKLSREKNSLESNLLNYKHHQSTTKLQMEDFHHRLDGIEKRQIYLLNFFEKALQNPSFVDHLSRKIESMDLAAYNKKRRLPQIDHVQPVAEAVSDMNLVSGSTQGSNEGEESMQKNLSEGELNGMQTRTGLAFAPATLELADTGTSFTFNMDSCLSRRATTTESPNLHSLEPSSEEGDSHISCQLNLTLASCPLEFNRNSYSARSPQIDCQEIAESIVNANGKESENGVSLNRVVANEVINLASPQEASGNGQVKPAAPRRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRSVHRISSNSKNMDNLTL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02743 451 MobiDBLite consensus disorder prediction 424 451 - -
Vifa6g02743 451 Coils Coil 128 155 - -
Vifa6g02743 451 Gene3D - 16 111 IPR036388 -
Vifa6g02743 451 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Vifa6g02743 451 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02743 451 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02743 451 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02743 451 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02743 451 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g02743 451 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 257 IPR027725 -
Vifa6g02743 451 FunFam Heat shock transcription factor 1 14 111 - -
Vifa6g02743 451 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02743 Vifa-Chr6 929479703 929484027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02743 21 451 HSF AT4G13980 49.786 3.26e-145 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa6g02743 HSF_DNA-bind 3.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02743 K09419 - gmx:100786408 667.922