Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02733 ATGCTCAAATTCTCATTCCTCATTCCCCTCATCATCGCCACCACCATCGTCGCCGATGACGACGCCACCGTCATGAAAAACCTCCTCCGAAACCTTAAACCACCTCCTCCCAAATGGTCCCCCGATACTCCCTCCTGTCAATGGACCGGCATCACGTGCGATTCATCAAACCGCGTCACTGAAATACGACTCTCTTCGTTAAACCTCGCCGGAACCCTCCCCTCCGATCTCAACTCCCTCACTCAACTCACAGTTCTCGATCTCAGAAACAACTCTCTCTCCGGTTCATTCCCTTCCCTCGCCAATCTCTCCTCCCTCAAAACCGCTTACCTCGGGGCTAATAAATTCACCTCCGTCTCTTCCGCTGCATTTTCCGGCCTCACTTTGCTTCAAGAACTCTACTTCGACCATAACTCTGACCTCTCTCAATGGGAATTCCCCAACGAGTTGACTCAGTCTTCTAGTCTCACCACACTCGATCTTTCTTCCTCAATGATCAACGGAAATTTACCCGACATTTTCGGTAATTTCTCTAGTCTCACCAGTGTTCGACTCTCCTTCAACAATTTCACTGGAGGATTACCTAACTCTCTCGCTGCTTCCTCAATCCAGAGTTTATGGCTCAATAATCAGCTACCCGGGTTTACCGGTTCCATCGCCGTGATTTCCAACATGACTTATTTAACTCAGGTATGGTTTCAAAATAATAAATTCACCGGTCCAATTCCAGATATTTCGCAATGCAAGAATCTCTTTGATCTGCAACTTAGGGATAATCAGTTTACCGGTGTAGTTCCTGATTCTCTGATGAGTATGTCTAGTTTGAAGAATGTTACTCTTCGTAACAATCTGCTTCAGGGACCTGTTCCTGTTTCCTCTAATGGTGGGACAATTGATATTGGCCTTAATAGCTTTTGTCTTGATAAACCTGGGCCTTGTGATGACAGGGTTATGGTTTTGCTTAAAATTGCTGAGGGGTTTGGGTATCCTATTCAATTTGCGAATTCGTGGAAAGGGAATGATCCTTGTAAAGATTGGCAATCTGTTTTGTGTAGTGGGGGTAAGATTAACACACTGAATTTCGGGAAAAGGGATTTGCAGGGAACGATTTCGCCTGCTTTTGCCAATTTGACTGATTTGAACAGGTTGATTCTAAGTGGGAATAATTTGACTGGTTCTATACCTCAGAGTTTGACTACATTGACTCAGCTTGAGACTCTTGATGTATCTAACAATAATCTCTCAGGAAAGGTTCCCGTGTTCTCACCAAAGGTGAAGTTAATAACTGATGGTAATGTTTTGCTTGGTAAAGATCCTGGTTCGGAAGGTGGAACGCCTGGTTCTTCTCCCGGTGGACCGGGAAAAGGTACTGCATTGAGTCCGGGTTGGATTGCTGGTATAGTGATTGTTGTTGTGCTTTTTGTTGCTGTAGTATTGTTTGTTTCTTGCAAGTGTTATTCCAGAAGACGGTTTCGGAAATTTTCAAGGGTTAGTAATCCTGAAAATCGGCAAGAAAATGTTAAACTTGGTCTTGCGAGTGTTTCAAATGGATATGGTGGTGTTCCGAGCGAGTTGCAAAGCCAGAGCAGTGCTGATCATAGTGATCTTCATGGTTTTGATGGAGGAAGTGGCGGAAATGCTATTATTTCCATTCATGTTCTTCGACAAGTGACGAATGATTTCAGTGATGATAACATTTTGGGCAGGGGAGGGTTTGGTATTGTTTATAAAGGGGAATTACCTGATGGAACTAAAATTGCTGTCAAGAGGATGATATCTGTTGCAATGGGAAGCAAAGGATTGAATGAGTTCCAAGCAGAGATTTCTGTTCTTACTAAGGTTAGGCATAGACATTTGGTCGCCCTTTTGGGATACTGCATCAATGGCAATGAGAGGCTATTGGTATATGAGCATATGCCTCAAGGTACATTAACGCAGCATCTGTTTGAATGTGAAGAACATGGCTACACTCCTTTGACATGGAAACAAAGGTTGGCAATAGCTTTGGATGTTGGACGGGGGGTCGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCATCAAATATACTATTAGGCAATGACATGAGAGCAAAAGTTGCAGATTTCGGGTTGGTTAAAAACGCACCGGACGGGAATTATTCTCTTGAGACAAGGTTGGCCGGAACATTTGGATATCTTGCACCCGAGTACGCAGCTACTGGAAGAGTGACAACCAAAGTGGACGTTTACGCGTTTGGAGTAGTTTTGATGGAACTGATCACAGGTAAAAAGGCATTGGATGATTCTGTGCCTGATGAAAGGTCTCATTTGGTTACATGGTTCCGTAGGGTACTCATCACCAAGGAAAACATTCCAAAGACAATTGATCAAACTCTCAACCCAGATGAGGAAACAATGTTGAGCATATATAAAGTGGCCGAGCTGGCTGGCCATTGCACCGCCCGTGAACCATACCAAAAGGCCAGATATGGGACATGCAGTGAATGTTACTGGAAAGATTCCTTTGGTTCAACGGATTGCCGGTAA 2547 0.4401 MLKFSFLIPLIIATTIVADDDATVMKNLLRNLKPPPPKWSPDTPSCQWTGITCDSSNRVTEIRLSSLNLAGTLPSDLNSLTQLTVLDLRNNSLSGSFPSLANLSSLKTAYLGANKFTSVSSAAFSGLTLLQELYFDHNSDLSQWEFPNELTQSSSLTTLDLSSSMINGNLPDIFGNFSSLTSVRLSFNNFTGGLPNSLAASSIQSLWLNNQLPGFTGSIAVISNMTYLTQVWFQNNKFTGPIPDISQCKNLFDLQLRDNQFTGVVPDSLMSMSSLKNVTLRNNLLQGPVPVSSNGGTIDIGLNSFCLDKPGPCDDRVMVLLKIAEGFGYPIQFANSWKGNDPCKDWQSVLCSGGKINTLNFGKRDLQGTISPAFANLTDLNRLILSGNNLTGSIPQSLTTLTQLETLDVSNNNLSGKVPVFSPKVKLITDGNVLLGKDPGSEGGTPGSSPGGPGKGTALSPGWIAGIVIVVVLFVAVVLFVSCKCYSRRRFRKFSRVSNPENRQENVKLGLASVSNGYGGVPSELQSQSSADHSDLHGFDGGSGGNAIISIHVLRQVTNDFSDDNILGRGGFGIVYKGELPDGTKIAVKRMISVAMGSKGLNEFQAEISVLTKVRHRHLVALLGYCINGNERLLVYEHMPQGTLTQHLFECEEHGYTPLTWKQRLAIALDVGRGVEYLHSLAQQSFIHRDLKPSNILLGNDMRAKVADFGLVKNAPDGNYSLETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGKKALDDSVPDERSHLVTWFRRVLITKENIPKTIDQTLNPDEETMLSIYKVAELAGHCTAREPYQKARYGTCSECYWKDSFGSTDCR 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02733 848 Gene3D Ribonuclease Inhibitor 315 438 IPR032675 -
Vifa6g02733 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 686 698 IPR008271 GO:0004672|GO:0006468
Vifa6g02733 848 SUPERFAMILY Protein kinase-like (PK-like) 548 836 IPR011009 -
Vifa6g02733 848 Pfam Leucine rich repeat 82 138 IPR001611 GO:0005515
Vifa6g02733 848 FunFam Leucine-rich repeat receptor-like kinase 315 438 - -
Vifa6g02733 848 Gene3D Transferase(Phosphotransferase) domain 1 639 838 - -
Vifa6g02733 848 Gene3D Phosphorylase Kinase; domain 1 527 638 - -
Vifa6g02733 848 ProSiteProfiles Leucine-rich repeat profile. 82 104 IPR001611 GO:0005515
Vifa6g02733 848 CDD STKc_IRAK 567 824 - -
Vifa6g02733 848 Gene3D Ribonuclease Inhibitor 22 310 IPR032675 -
Vifa6g02733 848 SMART serkin_6 561 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02733 848 Pfam Protein tyrosine and serine/threonine kinase 565 780 IPR001245 GO:0004672|GO:0006468
Vifa6g02733 848 ProSitePatterns Protein kinases ATP-binding region signature. 567 589 IPR017441 GO:0005524
Vifa6g02733 848 FunFam PTI1-like tyrosine-protein kinase 3 639 831 - -
Vifa6g02733 848 ProSiteProfiles Protein kinase domain profile. 561 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02733 848 SUPERFAMILY L domain-like 39 424 - -
Vifa6g02733 848 Pfam Leucine rich repeat N-terminal domain 19 54 IPR013210 -
Vifa6g02733 848 Pfam Leucine rich repeat N-terminal domain 319 352 IPR013210 -
Vifa6g02733 848 FunFam Receptor-like kinase TMK4 19 311 - -
Vifa6g02733 848 PANTHER OSJNBA0070M12.3 PROTEIN 6 830 - -
Vifa6g02733 848 MobiDBLite consensus disorder prediction 436 455 - -
Vifa6g02733 848 FunFam receptor protein kinase TMK1 520 638 - -
Vifa6g02733 848 PRINTS Leucine-rich repeat signature 401 414 - -
Vifa6g02733 848 PRINTS Leucine-rich repeat signature 83 96 - -
Vifa6g02733 848 SMART LRR_typ_2 103 126 IPR003591 -
Vifa6g02733 848 SMART LRR_typ_2 401 423 IPR003591 -
Vifa6g02733 848 SMART LRR_typ_2 377 400 IPR003591 -
Vifa6g02733 848 SMART LRR_typ_2 80 102 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02733 Vifa-Chr6 927039359 927042570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02733 43 824 Receptor kinase-like Gene Family AT5G49660 29.934 1.07e-85 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vifa6g02733 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02733 - - gmx:100286794 1073.92