Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02732 ATGATAACATTTTTTCTACGACTATTGTTCAGTCCGCAACTACTGGTCGTTCCGCGGCTATTGTTCACGCTGCTGGTTCCTCATGTTGCTCCGCCTCCTCCTCCTCTCATGAGCAGCAGTGGTGGTACCGGCTCAAACTATTCAGGTGGCGAACTGCTTCCACCTCCATCTCCAGGCCTTGCACTTAGTACTGCAAAGAGTACGTTTACATACGAGGAGTTGGCACGTGCAACGGATGGCTTCTCTGATGCTAACCTCCTTAGACAAGGTGGATTTGGATATGTTCATAGAGTTATTCTCCCTAATGGCAAAGAGGTTGCTGTTAAGCAGCTAAAAGCTGGAAGTGGACAAGGAGAACGCGAATTTCAAGCTGAAGTTGAGATTATTAGCCGTGCTCACCATAAACATCTTGTTTCTCTTGTTGGATACTGCAGCACTGGGTTTCAGAGGTTACTTGTTTATGAGTTTGTTCCAAACAATGCATTGGAATTCCATTTACATGGAAATGGACGACCAACTATGGATTGGTCAACAAGACTGCGAATTGCTTTAGGAGCTGCAAAAGGACTTGCTTATCTTCATGAAGATTGTCATCCTAAGATCATTCATGTGATATTAAAGCGTCTAACCTCCTTCACGCGAGATTCTTTTCCGCCATCTATCACCCTCCGTTTCCGCGTAAGTTTCTGCACATACCACTCAATCATGTAG 711 0.4501 MITFFLRLLFSPQLLVVPRLLFTLLVPHVAPPPPPLMSSSGGTGSNYSGGELLPPPSPGLALSTAKSTFTYEELARATDGFSDANLLRQGGFGYVHRVILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRAHHKHLVSLVGYCSTGFQRLLVYEFVPNNALEFHLHGNGRPTMDWSTRLRIALGAAKGLAYLHEDCHPKIIHVILKRLTSFTRDSFPPSITLRFRVSFCTYHSIM 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02732 236 SUPERFAMILY Protein kinase-like (PK-like) 60 204 IPR011009 -
Vifa6g02732 236 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 65 205 IPR047117 -
Vifa6g02732 236 FunFam proline-rich receptor-like protein kinase PERK1 59 156 - -
Vifa6g02732 236 Gene3D Transferase(Phosphotransferase) domain 1 157 215 - -
Vifa6g02732 236 Gene3D Phosphorylase Kinase; domain 1 61 156 - -
Vifa6g02732 236 Pfam Protein tyrosine and serine/threonine kinase 86 196 IPR001245 GO:0004672|GO:0006468
Vifa6g02732 236 ProSiteProfiles Protein kinase domain profile. 81 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02732 Vifa-Chr6 926976736 926977446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02732 28 207 Trihelix Transcription Factor Family AT4G32710 60.109 9.46e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa6g02732 PK_Tyr_Ser-Thr 1.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02732 - - psat:127081833 322.013