Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02731 ATGAGCAGCAGTGGTGGTACCGGCTCAAACTATTCAGGTGGCGAACTGCTTCCACCTCCATCTCCAGGCCTTGCACTTAGTACTGCAAAGAGTACGTTTACATACGAGGAGTTGGCACGTGCAACGGATGGCTTCTCTGATGCTAACCTCCTTAGACAAGGTGGATTTGGATATGTTCATAGAGTTATTCTCCCTAATGGCAAAGAGGTTGCTGTTAAGCAGCTAAAAGCTGGAAGTGGACAAGGAGAACGCGAATTTCAAGCTGAAGTTGAGATTATTAGCCGTGCTCACCATAAACATCTTGTTTCTCTTGTTGGATACTGCAGCACTGGGTTTCAGAGGTTACTTGTTTATGAGTTTGTTCCAAACAATGCATTGGAATTCCATTTACATGGAAATGGACGACCAACTATGGATTGGTCAACAAGACTGCGAATTGCTTTAGGAGCTGCAAAAGGACTTGCTTATCTTCATGAAGATTGTCATCCTAAGATCATTCATGTGATATTAAAGCGTCTAACCTCCTTCACGCGAGATTCTTTTCCGCCATCTATCACCCTCCGTTTCCGCGTAAGTTTCTGCACATACCACTCAATCATGTAG 603 0.4411 MSSSGGTGSNYSGGELLPPPSPGLALSTAKSTFTYEELARATDGFSDANLLRQGGFGYVHRVILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRAHHKHLVSLVGYCSTGFQRLLVYEFVPNNALEFHLHGNGRPTMDWSTRLRIALGAAKGLAYLHEDCHPKIIHVILKRLTSFTRDSFPPSITLRFRVSFCTYHSIM 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02731 200 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 29 169 IPR047117 -
Vifa6g02731 200 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g02731 200 Gene3D Transferase(Phosphotransferase) domain 1 121 180 - -
Vifa6g02731 200 ProSiteProfiles Protein kinase domain profile. 45 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02731 200 SUPERFAMILY Protein kinase-like (PK-like) 24 168 IPR011009 -
Vifa6g02731 200 Gene3D Phosphorylase Kinase; domain 1 25 120 - -
Vifa6g02731 200 FunFam proline-rich receptor-like protein kinase PERK1 23 120 - -
Vifa6g02731 200 Pfam Protein tyrosine and serine/threonine kinase 50 160 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02731 Vifa-Chr6 926976736 926977338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02731 26 171 Trihelix Transcription Factor Family AT4G32710 68.493 1.99e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa6g02731 PK_Tyr_Ser-Thr 9.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02731 - - psat:127081833 314.309