Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02730 ATGATAACATTTTTTCTACGGCTATTGTTCAGTCCGCAACTACTGGTCGTTCCGCGGCTATTGTTCACGCCGCTGGTTCCTCATGTTGCTCCGCCTCCTCCTCCTCTCATGAGCAGCAGTGGTGGTACCGGCTCAAACTATTCAGGTGGCGAACTGCTTCCACCTCCATCTCCAGGCCTTGCACTTAGTACTGCAAAGAGTACGTTTACATACGAGGAGTTGGCACGTGCAACAGATGGCTTCTCTGATGCTAACCTCCTTAGACAAGGTGGATTTGGATATGTTCATAGAGTTATTCTCCCTAATGGCAAAGAGGTTGCTGTTAAGCAGCTAAAAGCTGGAAGTGGACAAGGAGAACGCGAATTTCAAGCTGAAGTTGAGATTATTAGCCGTGCTCACCATAAACATCTTGTTTCTCTTGTTGGATACTGCAGCACTGGGTTTTAG 447 0.4743 MITFFLRLLFSPQLLVVPRLLFTPLVPHVAPPPPPLMSSSGGTGSNYSGGELLPPPSPGLALSTAKSTFTYEELARATDGFSDANLLRQGGFGYVHRVILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRAHHKHLVSLVGYCSTGF 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02730 148 Gene3D Phosphorylase Kinase; domain 1 61 147 - -
Vifa6g02730 148 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 60 147 - -
Vifa6g02730 148 ProSiteProfiles Protein kinase domain profile. 81 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02730 148 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 65 147 IPR047117 -
Vifa6g02730 148 SUPERFAMILY Protein kinase-like (PK-like) 60 147 IPR011009 -
Vifa6g02730 148 MobiDBLite consensus disorder prediction 32 53 - -
Vifa6g02730 148 Pfam Protein tyrosine and serine/threonine kinase 86 145 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02730 Vifa-Chr6 926967083 926967529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02730 28 147 Trihelix Transcription Factor Family AT4G32710 56.911 2.37e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa6g02730 PK_Tyr_Ser-Thr 1.7e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02730 - - psat:127081833 206.453