Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02724 ATGCATAACCAAGATCAAAGAAAAACTCACACTCCAGGGCACGAGAATCATGGAGTTTACGTGTGTAACAAATGTGGATGGCCGTTTCCGAATCCACATCCCAGTGCTAAACACAGACGCGCTCACAAGAAGATCTGTGGAACCGTTCATGGTTACAAACGGAAACAAAACGGTTCAGATGATGAACGTGTTTCGGATGATGATTACAAAACACCGGGTTTGCTTTTGTCAACTTCCAACAATGACAAGGGTAATATTGGAATTAAAGCAAAATTTACTAGGGCAGAAAGTGATGTGTTTTCAGATGCAGTTGCTGATTTTCCAGATACTGGAGTTAAGGATCATTTTCTTCTACAAACCCTGAATGGGTCTTCTGAGGATAATGATTTTAATGCTACAGATTTGACTCCACTGATTGCCAACTCTAGCAATGAAAGTTTTGAAGTCGGAAATATAGTCGGGTCGCAAGGTCAATTACCAGGCTCTACTGTGGATCCATTAATAAGCTCAGTTGCAGATTCAAAGGCTGAAGAATTGAGTATTGTGCATGGTGATGGTTTTTCTGGTCTGTCAAGTGACTCAAGTATCAGCAAAGCTGCAAGTGATATTTCACCAGAAAAAAATATCTATGATGGTGAAGATGTAACAGGTTCTCACTTGACACGTGGTGAAAACGAGTCTAATTTGAAAGGAAAGGATGAGGTAAAATCAGAAAGAGACATGGTTGAAATTGTGGAGTCAACTAATAACATTGTAGGTGATGAAGCTGTTAATCCAAAGGAAAAGAAGGGATCCGAGTTCGTTTCTTTGCAGCCTCAATATGAACTTCCACTAGAAGTAAACTCGTCTATTATCACCAAAGACGTGCAGGTAGAATCTGCAAATGCAATAGAGTCCACTAACAGTAGTGAAGTCAAGGTTTTGCAGGAAAAGGAAGACGTGAATGTTAGTAGTAATCCACTTCCTCTGCATGATGATAGACTTGGTGTAGCTTATCCGCACAGCAAGTCATTGAAACATGAGGAAGATGTCGAGTCATTGAAACATGAGGAAGATGTTAGCAAGGAAAGTAATTTTCATTTCAACACAAGCCAATTAAGTGAAAGTAGTGGTGTTCTCTCTGAAGACATACATGCTGAGCATGGCTCTGAATTTTCTTTAGGCGAGCTTGCAACTGAAACTTGTCAAAGATCACATGAAATTGGAGTGTCTATGAAAGCTGAGATGAGCGAGAATGATTTTTCAGAAGAGCATGGACCTGATGACATTCACGAAAATTCTCAACCCAAAGATGGAAAGGTTGCAGGAGCTAATGTGGAAAGTGACACTGAAGTTCTATTGAATGATTATCAACCTAGTGACCTCTTGCAATCTGAAGTTGAGGAATCAAGTGTCTTATATAAGAATAATGGTGATGATGCTGGTGAATTGGGTAAAACTGAACAGTGTGATAGAACTGAAGATGAAATCTATAGCAATATCAAATTATATGAGGAGCATAACGAATTCACTGGTGTTGCTGTTGACTCACATGAAGAACAAGCTACACATCTATTAGTGAAGACTGCAGAAGACATTTCCATCAAGCATACACCACATTCTTCAACCAACACCAAGCCTTCTGCTCAACACGATTCTGCCGTTGAAGATGATTCAAATGGAGAGTCTGTTCAAGATCAAGGAATTGATACTTCTGCTGTCTCGCATGTAGCTACTGAAGACCTTACCAGCAAGTATACAGCACATTCTTCTTTAAATACTAAGTCTTCTGCTCAACATGTTTCTGCTGTCGAAGATAATTCAGTTGGAGAAGTGTCTAGAATTACTGCTGTGCCACTTTCGGTTCAAGATCAAATTGTTAATAACTTGATTAAACCAACTTCTTCCGGAACGGATGCTTCAGTTGACTCTAGTAGCCGGCGTGAAAGTTTGGAAGGGAACTGGGGCTCCAGTTCAGTTATCTCAGTGATATCCGATGCACCAGCTGTTATTGATGCCGAAACTTTACCTCCAATCGGTTCATTGGCAACATCAGAAGAAGGCAAATCTGACCTGAACTCCCTAGAGGCTGCACCTGCAGATAGACAGCTATCTGGAAAATCAGGAACATTTGAACTGCCATCTTTCACGACATTGGTTGAGCCTAACCATGCGGCTGCTAGTCCTAAAGATGCTGCTTCTGAAATCCCGAACCCTCAACCATTAAGTTCCACCTTGCCAGCCGGTTGGTTTCCAACCCTGAATCAGGTTATCAATGATTCTGAAGGGAGAAAGAAAAACGAAGAAACAATTGCCAAAATAACAAACCGGAGCAGCAGTAAAGAGCACACACCTCTGAAGAGTCTCTTGGGAGAGGTTACTCATAGCAGCAAAAAGCCAAAATCGCCAAAAGTTGAAGAAACTAATAATGTGTCTGGATTGGCAACTGTTAACTCAATTCTTGGTCCCGAGTCCCCTTCGGCAGCCCAAGCAGCGAAAGAAAAGGCTGCAGATGAATGGAACTCTCCAGCAAGATATCCTGCAAATATCAAGAGAGAGAAAAAGAAATTGAAGAGCAAACCATTTTGGTTACAGTTTGTTTGTTGCTCAACAGCAGTGGATCATCCTCAAAGAACGTAG 2619 0.4112 MHNQDQRKTHTPGHENHGVYVCNKCGWPFPNPHPSAKHRRAHKKICGTVHGYKRKQNGSDDERVSDDDYKTPGLLLSTSNNDKGNIGIKAKFTRAESDVFSDAVADFPDTGVKDHFLLQTLNGSSEDNDFNATDLTPLIANSSNESFEVGNIVGSQGQLPGSTVDPLISSVADSKAEELSIVHGDGFSGLSSDSSISKAASDISPEKNIYDGEDVTGSHLTRGENESNLKGKDEVKSERDMVEIVESTNNIVGDEAVNPKEKKGSEFVSLQPQYELPLEVNSSIITKDVQVESANAIESTNSSEVKVLQEKEDVNVSSNPLPLHDDRLGVAYPHSKSLKHEEDVESLKHEEDVSKESNFHFNTSQLSESSGVLSEDIHAEHGSEFSLGELATETCQRSHEIGVSMKAEMSENDFSEEHGPDDIHENSQPKDGKVAGANVESDTEVLLNDYQPSDLLQSEVEESSVLYKNNGDDAGELGKTEQCDRTEDEIYSNIKLYEEHNEFTGVAVDSHEEQATHLLVKTAEDISIKHTPHSSTNTKPSAQHDSAVEDDSNGESVQDQGIDTSAVSHVATEDLTSKYTAHSSLNTKSSAQHVSAVEDNSVGEVSRITAVPLSVQDQIVNNLIKPTSSGTDASVDSSSRRESLEGNWGSSSVISVISDAPAVIDAETLPPIGSLATSEEGKSDLNSLEAAPADRQLSGKSGTFELPSFTTLVEPNHAAASPKDAASEIPNPQPLSSTLPAGWFPTLNQVINDSEGRKKNEETIAKITNRSSSKEHTPLKSLLGEVTHSSKKPKSPKVEETNNVSGLATVNSILGPESPSAAQAAKEKAADEWNSPARYPANIKREKKKLKSKPFWLQFVCCSTAVDHPQRT 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02724 872 MobiDBLite consensus disorder prediction 207 236 - -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 408 435 - -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 408 429 - -
Vifa6g02724 872 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 422 863 - -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 526 564 - -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 47 76 - -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 717 742 - -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 769 836 - -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 799 818 - -
Vifa6g02724 872 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 42 IPR013087 -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 625 646 - -
Vifa6g02724 872 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 54 69 - -
Vifa6g02724 872 MobiDBLite consensus disorder prediction 529 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02724 Vifa-Chr6 925345467 925349312 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g02724 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02724 - - psat:127101544 1092.03