Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02709 ATGGAAATTGTTCGACCTCATAGTCACAGGAACTTGTTTTCCAGTAACGACGCCGCACCTGCTCCAACTATCCCCCTTTATCGCTCTGCTCCGCCACTCGAAGTCCGACTCGAAGATTTCGAGTCTTTCGCCATCGATCGCCTCCGAGTTCTAAAGGGAATTTCTGATGGTTTGTCACGGGGAAAGAAACCGGATGAAATGGAAAAATTGGTAAGCGAACTGTGGAAAGTGAACATGAGACATCAGCATGCTTCTGAGGTTTTGAACAAGGATATTATATCTCATTTTGTTTTGCGTTTAGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTCTCTATGGAATGTGCACTTTTTCGCTACCGTTTTCGTTTTCTAACTCCTGAAGCTCAGAGGGCAATCATGGACGAATTTGACATAACTTGCAAGGCTGTTAACATTATGGAATTTGAGAGCATTAAAGAGAAACTGGGACAAGTTGCACGTTCCATGGGTCAGCCTTTACCCACAGGTGATGCAATCTTTTACAAGGTACCATTTGAAGATGTTCCAGAACTTGTAGCTGGGCGTAGAGTGTTGTTAAGTCAAGGATATGCTTATGTTGCAATGAATCAGGTTGTTTCACTTGTAGCCACTCTATTCCGCAGTCAGCTGTCAAAGACACTCATCCTTACAAACAGAAAATGGACATCTTCAATCAGAGAACAGGAGAAGCATAGGTTGACTCCGATTGTGGAAGCCTTGTGCTCAAGTTATCTAGGTCCTGATTTTTCTCAGCCTAAGGAATATGCTGAGATATCTTTAAAAGACATTGATCAACTTGCCAAGACCTCATTTCCTTTGTGCATGCGTCACCAGTTTGACAAGCTGAAAGAGGACCATCATTTAAAGCACGGTGGGAGGATGCAACTAGGCCTCTTTCTCAAGGGTGTTGGTTTGAACCTGGATGATGCACTTGCATTTTGGAGAGCTGAGTTCTCTAAGAAGGTTGGTTTGGAGAAGTTTGAGAAAGAATATGCATATACCATTCGCCATAATTATGGAAAGGAAGGGAAGAGAACTGATTATACTCCCTATTCTTGTTATAAAATTATTTCATCAACTCCCGGTGCTGGAGATCATCATGGTTGCCCCTATCGACACTTCAGTGAAGAGAATCTAAGAGCTGCTCTCAGCAGAATGGGGGTGAACAGTCGAGCAACGGAAGATGTCATGAACAAAGTGCGAAATAGACATTATCAGTTAGCATGTACCTTGACATTTGAAGCTCTTCATGGCGTGCCGTGTGATGCTGGGATTAATCATCCAAATCAATATTTCAGTGATAGTCAAAAGATATTGCACCCAAAGAAGGACTCTTCAACCTAA 1371 0.4274 MEIVRPHSHRNLFSSNDAAPAPTIPLYRSAPPLEVRLEDFESFAIDRLRVLKGISDGLSRGKKPDEMEKLVSELWKVNMRHQHASEVLNKDIISHFVLRLVYCRTEDLRKWFLSMECALFRYRFRFLTPEAQRAIMDEFDITCKAVNIMEFESIKEKLGQVARSMGQPLPTGDAIFYKVPFEDVPELVAGRRVLLSQGYAYVAMNQVVSLVATLFRSQLSKTLILTNRKWTSSIREQEKHRLTPIVEALCSSYLGPDFSQPKEYAEISLKDIDQLAKTSFPLCMRHQFDKLKEDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRAEFSKKVGLEKFEKEYAYTIRHNYGKEGKRTDYTPYSCYKIISSTPGAGDHHGCPYRHFSEENLRAALSRMGVNSRATEDVMNKVRNRHYQLACTLTFEALHGVPCDAGINHPNQYFSDSQKILHPKKDSST 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02709 456 PANTHER DNA PRIMASE LARGE SUBUNIT 20 451 IPR007238 GO:0006269
Vifa6g02709 456 FunFam DNA primase large subunit 6 249 - -
Vifa6g02709 456 CDD PriL_PriS_Eukaryotic 26 444 IPR016558 -
Vifa6g02709 456 Gene3D - 5 249 - -
Vifa6g02709 456 Pfam Eukaryotic and archaeal DNA primase, large subunit 176 441 IPR007238 GO:0006269
Vifa6g02709 456 PIRSF DNA_primase_large 3 456 IPR016558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02709 Vifa-Chr6 924314599 924322352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02709 1 451 Core DNA Replication Machinery Family AT1G67320 66.119 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02709 K02685 - gmx:100806321 811.216