Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02708 ATGGAAATTGTTCGACCTCATAGTCACAGGAACTTGTTTTCCAGTAACGACGCCGCACCTGCTCCAACTATCCCCCTTTATCGCTCTGCTCCGCCACTCGAAGTCCGACTCGAAGATTTCGAGTCTTTCGCCATCGATCGCCTCCGAGTTCTAAAGGGAATTTCTGATGGTTTGTCACGGGGAAAGAAACCGGATGAAATGGAAAAATTGGTAAGCGAACTGTGGAAAGTGAACATGAGACATCAGCATGCTTCTGAGGTTTTGAACAAGGATATTATATCTCATTTTGTTTTGCGTTTAGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTCTCTATGGAATGTGCACTTTTTCGCTACCGTTTTCGTTTTCTAACTCCTGAAGCTCAGAGGGCAATCATGGACGAATTTGACATAACTTGCAAGGCTGTTAACATTATGGAATTTGAGAGCATTAAAGAGAAACTGGGACAAGTTGCACGTTCCATGGGTCAGCCTTTACCCACAGGTGATGCAATCTTTTACAAGGTACCATTTGAAGATGTTCCAGAACTTGTAGCTGGGCGTAGAGTGTTGTTAAGTCAAGGATATGCTTATGTTGCAATGAATCAGGTTGTTTCACTTGTAGCCACTCTATTCCGCAGTCAGCTGTCAAAGACACTCATCCTTACAAACAGCGTTTATATATGTTGCAGAAAATGGACATCTTCAATCAGAGAACAGGAGAAGCATAGGTTGACTCCGATTGTGGAAGCCTTGTGCTCAAGTTATCTAGGTCCTGATTTTTCTCAGCCTAAGGAATATGCTGAGATATCTTTAAAAGACATTGATCAACTTGCCAAGACCTCATTTCCTTTGTGCATGCGTCACCAGTTTGACAAGCTGAAAGAGGACCATCATTTAAAGCACGGTGGGAGGATGCAACTAGGCCTCTTTCTCAAGGGTGTTGGTTTGAACCTGGATGATGCACTTGCATTTTGGAGAGCTGAGTTCTCTAAGAAGGTTGGTTTGGAGAAGTTTGAGAAAGAATATGCATATACCATTCGCCATAATTATGGAAAGGAAGGGAAGAGAACTGATTATACTCCCTATTCTTGTTATAAAATTATTTCATCAACTCCCGGTGCTGGAGATCATCATGGTTGCCCCTATCGACACTTCAGTGAAGAGAATCTAAGAGCTGCTCTCAGCAGAATGGGGGTGAACAGTCGAGCAACGGAAGATGTCATGAACAAAGTGCGAAATAGACATTATCAGTTAGCATGTACCTTGACATTTGAAGCTCTTCATGGCGTGCCGTGTGATGCTGGGATTAATCATCCAAATCAATATTTCAGTGATAGTCAAAAGATATTGCACCCAAAGAAGGACTCTTCAACCTAA 1389 0.4262 MEIVRPHSHRNLFSSNDAAPAPTIPLYRSAPPLEVRLEDFESFAIDRLRVLKGISDGLSRGKKPDEMEKLVSELWKVNMRHQHASEVLNKDIISHFVLRLVYCRTEDLRKWFLSMECALFRYRFRFLTPEAQRAIMDEFDITCKAVNIMEFESIKEKLGQVARSMGQPLPTGDAIFYKVPFEDVPELVAGRRVLLSQGYAYVAMNQVVSLVATLFRSQLSKTLILTNSVYICCRKWTSSIREQEKHRLTPIVEALCSSYLGPDFSQPKEYAEISLKDIDQLAKTSFPLCMRHQFDKLKEDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRAEFSKKVGLEKFEKEYAYTIRHNYGKEGKRTDYTPYSCYKIISSTPGAGDHHGCPYRHFSEENLRAALSRMGVNSRATEDVMNKVRNRHYQLACTLTFEALHGVPCDAGINHPNQYFSDSQKILHPKKDSST 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02708 462 FunFam DNA primase large subunit 6 255 - -
Vifa6g02708 462 Pfam Eukaryotic and archaeal DNA primase, large subunit 176 447 IPR007238 GO:0006269
Vifa6g02708 462 CDD PriL_PriS_Eukaryotic 26 450 IPR016558 -
Vifa6g02708 462 Gene3D - 5 255 - -
Vifa6g02708 462 PIRSF DNA_primase_large 3 462 IPR016558 -
Vifa6g02708 462 PANTHER DNA PRIMASE LARGE SUBUNIT 20 457 IPR007238 GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02708 Vifa-Chr6 924314599 924322352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02708 1 457 Core DNA Replication Machinery Family AT1G67320 65.314 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02708 K02685 - gmx:100806321 804.668