Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02702 ATGGCATCTGGTTACGAATATGATATCAATGATTTGTATCAAGAAGCTCAAAGGAGATGGTTGAAGCCTGCCGAAGTCATGTACATTTTACAGAATAATGAAAAGTACCAATTCACTCAAGAGCCGCCGCAACAGCCAACAAGTGGTTCCCTATTTCTGTTTAACAGAAGAGTACTACGTTTCTTCCGTAAAGATGGTCATGCTTGGCGAAAGAAAAGAGATGGAAGAGCTGTCGGAGAAGCCCACGAACGACTGAAGGTTGGAAATGTTGAAGCCATAAATTGTTACTATGCACATGGAGAACTGAACCCTAATTTCCAGAGGCGGAGCTATTGGATGTTAGACTCGGAATTCGACCATATTGTTCTCGTTCATTACAGAGACACAGGCGAGGGAAGGCTCATTTCTGGACCTGGCACACAATTGTCACCGGGTTCCTCTTCTGCATTCAGTCAGAGTCCTAGGTCATATAATACTCAGAATCGAGGTTCAACGTCCATTGTTGAAGATTCCTATGGACCTAATCAGAGTTTCTCCAGTCCTGGACCTGCAGAAGTTACCTCTGATATATTCATTTTGAACAATGGAATGGGTCACTCAGAAGGAATGGAAGCAGAATCAGGAACCTCAACTGAACTTAAGATTACTCAAGCTTTGCGCCGATTGGAGGAACAGTTAAGTTTGAACGATGAAAGCTTTGAAGAAATTGTTCCCTTTTACAAAGAGAATGAAGCTACCTGTGATTCAAAACCACAGAACCAACAAGGGGTGATCTACAAGCAACAAGAATCTGCTTCTCTCTCTGGACCAGATAGTCAGGGGCTGTTATATGACGGATATAATGGAAGGAAAGGTGATAGTGGTGAAAGTTACCGTGAATTACTAGACCGTGATTTCCCTGATGGAAATGAAAGGGCTTTATCTTGGAAAAATGTATACTTGCCAGCTGGAAATCAAGAGAGCTCACAATCTTCTTCAATAAGGGAACCAGTTACGAACCGGGAAAACTCTTGTTGGACAAATTTCGACACTGATATTGCTGGAAACTCTGTTTTCTCACTACCTCAAGGTGTTGGTGGAGCCACACTTCCTCCATTTTCTTCTCTGGTAGAAACACGAGATACTCGTTCTGGCTACTATGCACCATTGTTTGACCAAAGCCAAAGTGGAGCATCTCATGATGCAGGTTCAAGCTTAACCGTTTCTCAAAAACAGAAATTTACTATTAAGGCAGTCTCCCCAGAATGGGGTTATGCCTCTGAGACTACAAAGGTTTTCATTATTGGATCTTTTCTTTGTCATCCCTCTGATTCTGCCTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTCTTGAGATAATTCAGGATGGTGTAATGTGTTGTGAAGTTCCTTCTCACATTCCTGGAAATGTTACTTTGTGTATTACTTCTGGAAACCGAGAGTCATGCAGTGAAGTAAGAGAGTTTGAGTATCGTGATAACACCAAGAGTTGCATCAAATGTAGTCCGTTGGAAATAGAAGCCACTAGAACTCCAGAAGAGCTGTTATTACTAGTTAGATTTGGGCAGGTGCTCCTTTCTGCGTCACCTGTAATGGATGATAACAATGAATCGGGAATTTTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGACGCTCTTCTATTTGGCAATGGAAATTCTTCTAGTACTGCCAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTACAGCTGTGGCTTACGTGCAGATCCCGGAAAGTAGATGAAGAAACAGGCTGTTCGTTGTCCAAGAAAGAACAGGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATAAATTTCCGCGATGTCAACGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGAGAAAAAACGGTTGCGTCGCTTATAGCGTCTGGTGCATCTGCTGGAGCAGTGACAGATCCTAGTGCACAAGATCCAATTGGTAAAACTGCAGCATCAATTGCAGCCAGCAGTGGGCATAAAGGACTGGCAGGGTATCTTTCAGAGGTAGCTATAACAAGCCACCTGTCATCTCTTACACTTGAAGAGAGTGAGCTATCGAAAAGTTCTGCGGAGCTTCAAGCAGATTTAACTGTTAGTAATGTCTCCAAGGAAAATATTGCTTTCAGTGAGGACCGGGCCTCACTCAAAGATTCGTTAGCTGCTGTAAGAAATACAACTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTTCACATTCATTTAGAAAACGGAGAGTAAAAGAAGCAGTTGGTGTTATGAGTGGACATGATATCAATGCTAATAGCATTGAAGACATGCCAGAGCTTTACGCTTTGTCAAAACTTGCCTTTCGGAACTCGCATGAACATAATTCAGCTGCATTATCGATTCAGAAAAAATATCGAGGTTGGAAAGGTCGCAGAGATTTCTTATCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAAGTTAGGAAGCATTACAGAGTATTATGGGCGGTTGGAATCTTGGATAAGGTTGTGCTAAGATGGCGTAGAAAAGGAGTTGGTTTACGAGGTTTCAAACCCGAGATGGAGATTAAAGAAAATGAAGATGAAGATATTCTCAAGGTGTTCAGAAAACAGAAAGTAGATGTTGAAATCAAAGAGGCTGTCTCAAGGGTGCTGTCCATGGTCAAATCTCGTGATGCTCGTGATCAATATCATCGCATGCTTGAGAAGTACCGTCAAGCCAAGGCTGAACTTGCGAGTACAAGTGAAGAAAAATTGTTAACAACTTCTATAGAAGATTACCTAAACATGGAGGATGATTCTTATCAATATCCCTAG 2910 0.4244 MASGYEYDINDLYQEAQRRWLKPAEVMYILQNNEKYQFTQEPPQQPTSGSLFLFNRRVLRFFRKDGHAWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGELNPNFQRRSYWMLDSEFDHIVLVHYRDTGEGRLISGPGTQLSPGSSSAFSQSPRSYNTQNRGSTSIVEDSYGPNQSFSSPGPAEVTSDIFILNNGMGHSEGMEAESGTSTELKITQALRRLEEQLSLNDESFEEIVPFYKENEATCDSKPQNQQGVIYKQQESASLSGPDSQGLLYDGYNGRKGDSGESYRELLDRDFPDGNERALSWKNVYLPAGNQESSQSSSIREPVTNRENSCWTNFDTDIAGNSVFSLPQGVGGATLPPFSSLVETRDTRSGYYAPLFDQSQSGASHDAGSSLTVSQKQKFTIKAVSPEWGYASETTKVFIIGSFLCHPSDSAWACMLGDVEVPLEIIQDGVMCCEVPSHIPGNVTLCITSGNRESCSEVREFEYRDNTKSCIKCSPLEIEATRTPEELLLLVRFGQVLLSASPVMDDNNESGIFIKQKADDDSWSHIIDALLFGNGNSSSTANWLLEELLKDKLQLWLTCRSRKVDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDVNGWTALHWAARFGREKTVASLIASGASAGAVTDPSAQDPIGKTAASIAASSGHKGLAGYLSEVAITSHLSSLTLEESELSKSSAELQADLTVSNVSKENIAFSEDRASLKDSLAAVRNTTQAAARIQAAFRSHSFRKRRVKEAVGVMSGHDINANSIEDMPELYALSKLAFRNSHEHNSAALSIQKKYRGWKGRRDFLSLRQKVVKIQAHVRGYQVRKHYRVLWAVGILDKVVLRWRRKGVGLRGFKPEMEIKENEDEDILKVFRKQKVDVEIKEAVSRVLSMVKSRDARDQYHRMLEKYRQAKAELASTSEEKLLTTSIEDYLNMEDDSYQYP 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02702 969 ProSiteProfiles IQ motif profile. 812 841 IPR000048 GO:0005515
Vifa6g02702 969 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Vifa6g02702 969 Gene3D - 811 860 - -
Vifa6g02702 969 ProSiteProfiles IQ motif profile. 754 783 IPR000048 GO:0005515
Vifa6g02702 969 SMART CG_1_2 12 130 IPR005559 GO:0003677
Vifa6g02702 969 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 941 - -
Vifa6g02702 969 Pfam Ankyrin repeats (3 copies) 618 696 IPR002110 GO:0005515
Vifa6g02702 969 ProSiteProfiles Ankyrin repeat region circular profile. 636 662 - -
Vifa6g02702 969 SUPERFAMILY E set domains 408 492 IPR014756 -
Vifa6g02702 969 MobiDBLite consensus disorder prediction 135 185 - -
Vifa6g02702 969 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Vifa6g02702 969 SUPERFAMILY Ankyrin repeat 605 697 IPR036770 -
Vifa6g02702 969 FunFam Calmodulin-binding transcription activator 4 isoform A 519 701 - -
Vifa6g02702 969 Coils Coil 921 948 - -
Vifa6g02702 969 FunFam Calmodulin-binding transcription activator 2 811 859 - -
Vifa6g02702 969 Gene3D - 517 698 IPR036770 -
Vifa6g02702 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 802 859 IPR027417 -
Vifa6g02702 969 Pfam IQ calmodulin-binding motif 814 832 IPR000048 GO:0005515
Vifa6g02702 969 Pfam IQ calmodulin-binding motif 837 856 IPR000048 GO:0005515
Vifa6g02702 969 FunFam Calmodulin-binding transcription activator 2 402 496 - -
Vifa6g02702 969 SMART ANK_2a 675 704 IPR002110 GO:0005515
Vifa6g02702 969 SMART ANK_2a 636 665 IPR002110 GO:0005515
Vifa6g02702 969 Pfam IPT/TIG domain 408 491 IPR002909 -
Vifa6g02702 969 ProSiteProfiles Ankyrin repeat profile. 636 668 IPR002110 GO:0005515
Vifa6g02702 969 ProSiteProfiles IQ motif profile. 835 860 IPR000048 GO:0005515
Vifa6g02702 969 MobiDBLite consensus disorder prediction 139 184 - -
Vifa6g02702 969 CDD IPT 408 493 - -
Vifa6g02702 969 Gene3D Immunoglobulins 401 497 IPR013783 -
Vifa6g02702 969 SMART iq_5 811 833 IPR000048 GO:0005515
Vifa6g02702 969 SMART iq_5 834 856 IPR000048 GO:0005515
Vifa6g02702 969 SMART iq_5 753 775 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02702 Vifa-Chr6 922207733 922214516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02702 3 966 CAMTA Transcription Factor Family AT1G67310 50.692 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vifa6g02702 CG-1 2.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02702 K21596 - gmx:100786880 1397.1