Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02697 ATGTCAATGGATGTTTTCTCTCTCACTTCAACTACCATTCCCTCTACTCTCACACATACGCATGCTGCACCAGATAAACCTTCCTGTCATCTCCACCTTTCCAAACACTCACATTTCATGAGGTACCCTCTTATCACAACACTCACCAGCAACAGAATCCGTAGTTGCAATAGTATAAGAGCTCAAGCTTCAGGTTCAACAAAATCTAGTACTGCTGAGGGGATTCCTGAGAAAACAGATTCCAAGGATGATAATCTAGTTTTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTCAGGGAGCTTATAAAGCTTGGTTTTAAAGTTAGAGCTGGAGTGAGGAATGCTCAGAAAGCTGGTGCATTGGTTCAGAGTGTTAAGCAATTGAAGCTTGATGGTGCAAGTGGAGGGGGTGAAGCTGTAGAGAAGCTTGAAATTGTGGAATGTGATTTGGAGAAGCCAAATCAAATTGGATCAGCATTAGGGAATGCATCCACTGTGATATGTACCATTGGTGCTAGTGAGAAGGAAATTTTCGACATTACTGGACCTTGTCGAATCGATTACAAAGCCACCAAAAACCTAGTTGATGCTGCAACTGTTGCCAAAGTAAATCACTTCATATTGGTTACTTCATTGGGAACAAACAAATTTGGTTTTCCTGCAGCTATTCTCAATTTATTTTGGGGAGTTTTGATTTGGAAAAGGAAGGCTGAAGAAGCATTGCTAGCAAGTGGAATTCCGTATACAATAGTGAGACCTGGTGGCATGGAGAGGCCTACTGATGCATACAAGGAAACACATAATGTAACTCTATCAACTGAGGATACTTTATTTGGGGGTCAAGTTTCAAACCTTCAGGTTGCTGAACTCATGGCAACCATGGCCAAGAATCCCGATCTTTCTTATTGTAAAATAGTAGAGGTCATTGCCGAGACAACTGCGCCATTGACACCTGCCGAAAAACTTCTTACCACGATACCTTCTCAACGCCCTTACGTTTCTCCGCCTAAGAAACCAGATACGGCAACTGTCAGTAATCCAGGTCCCTCTGATAATGTTGTAGCAGAAGTACTCAGTATTGCCCCTGAAATAGAAACAGAACAACCAAAACCAGTGGCGAAAACGGAACAGCCACTTTCTCCTTATACCGCTTATGATGATTTAAAGCCACCATCATCTCCTTCTCCAACTAAGCCTAGTGAGAAGAAACAGATAAACATCAGTGATGCAGTTCCAACACCTATTTCTTCGGATACTCCAGGTAGCATTCAAGAAATAGATGGCATTTCTCAGACAACATCTTCCTCAAAAGCGAAGGAGTCTCTATCTCCTTACGCAGCATATCCTGATTTAAAGCCTCCGAGTTCACCATCTCCGAGTGTACCAACTACATCAATATCCAAGATAGATACAGTAGTATCAAGCAATGGAGCAGCTCAACTTTCTGTGGAAGATACACCAAAGGATGATGGACAGCCCCTTCATGAACCAAAGTCAAGACCACTTTCACCTTATGCAATGTATGAGGACTTGAAGCCTCCTGCATCACCATCACCTTCATTCAGAAAATCCTAG 1584 0.4249 MSMDVFSLTSTTIPSTLTHTHAAPDKPSCHLHLSKHSHFMRYPLITTLTSNRIRSCNSIRAQASGSTKSSTAEGIPEKTDSKDDNLVFVAGATGKVGSRTVRELIKLGFKVRAGVRNAQKAGALVQSVKQLKLDGASGGGEAVEKLEIVECDLEKPNQIGSALGNASTVICTIGASEKEIFDITGPCRIDYKATKNLVDAATVAKVNHFILVTSLGTNKFGFPAAILNLFWGVLIWKRKAEEALLASGIPYTIVRPGGMERPTDAYKETHNVTLSTEDTLFGGQVSNLQVAELMATMAKNPDLSYCKIVEVIAETTAPLTPAEKLLTTIPSQRPYVSPPKKPDTATVSNPGPSDNVVAEVLSIAPEIETEQPKPVAKTEQPLSPYTAYDDLKPPSSPSPTKPSEKKQINISDAVPTPISSDTPGSIQEIDGISQTTSSSKAKESLSPYAAYPDLKPPSSPSPSVPTTSISKIDTVVSSNGAAQLSVEDTPKDDGQPLHEPKSRPLSPYAMYEDLKPPASPSPSFRKS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02697 527 Gene3D - 83 331 - -
Vifa6g02697 527 FunFam Protein TIC 62, chloroplastic 83 332 - -
Vifa6g02697 527 MobiDBLite consensus disorder prediction 464 485 - -
Vifa6g02697 527 CDD SDR_a5 87 315 - -
Vifa6g02697 527 MobiDBLite consensus disorder prediction 401 444 - -
Vifa6g02697 527 Pfam NAD(P)H-binding 91 301 IPR016040 -
Vifa6g02697 527 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 7 468 IPR044719 -
Vifa6g02697 527 MobiDBLite consensus disorder prediction 330 527 - -
Vifa6g02697 527 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 311 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02697 Vifa-Chr6 921223103 921225854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02697 79 215 Monolignol Biosynthesis Gene Families AT5G58490 27.815 3.97e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02697 - - mtr:25492706 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g02697 6 921223103 921225854 Vifa6g02697 6 921223103 921225854 ECH