Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02689 ATGGAGCTTCTCCACTCCGACGAAACCGTATCGGAAGATGCCGATATTCCTGAAGACAACAACACCCCGAACGATTCCCCGGACCCCACCGCCGGGATCGAAGACGGCGCGACTCTCGATGTATCGGGAAAGAACTTGGAGTTTCCGGTGCCGGAGAATTCTAAAGACGACGCCGTGGAGAGTTTATACATGTACAAGAACGTTTACAGTTTGATTCCGAAGTCGGTGGGTGGTCTCGTAAGGTTGAAAACGCTGAAATTCTTTGGGAATGAGATTAACTTGTTCGCGCCGGAGTTCGGTAATATGACGAGGTTGGAGCGGTTGCAGATGAAAGTGTCTTCGCCTGGAATTGGTGGGTTGCCGTTGCATAAATTGAAGGGTTTGAAAGAGCTTGAGCTTTCCAAAGGTCCTTCAAGACCTTCTGCGTTTCCCATATTGACTGAGATTGCTGCTCTCAAGTGTTTGACCAAACTTTGCATTTGTCACTTCTCTATAAGATACCTTCCTCCGGAAATTGAGTGCTTAAAGAAATTGGAGTATCTTGATCTTTCATTCAATAAATTGAAGACATTGCCCTCAGAGATTAGTTCTTTGGAAGTATTAATAACCATGAAAGTTGCTAATAATAAGTTGGTGGAATTACCGCCTGCTATGAAATCACTATCAAGGCTGGAGAATCTGGACCTGTCAAATAATAGGTTGACTTCGTTAGGATCGCTTGAACTTAGCTCAATGAATAGACTTCAGAACTTAAATCTTCAGTGTTTCACATGGAGGGACCGCATTGGAGGTGCCTTTGTGCATCCAAGCATTTTTCAAATTCCTTCATGGATATGCTGTAATATGGAAGGAAATGATGGAGATAGATGCAAAGACAATTATATCAGCTCTTCTGTTGAAATGGATGTCTATGAGAGCAATTTACAGGAAAATGAGGAAACATTTTCTCATGGACCTCATAACACCTCATCTAGCGTATTAACAAACTCCTCATCTAACAGTAGATGTTTTTCAGCCTGGAAGTCGGGTAAACGGTGGAAGCGGCGGCACTATAAACAGCAGAAAGCTCGTCAAGAACAGAAAGCTCGTCAAGAGCGGTTGAATAACAGCAGGAAATGGAAAGAAACTGTACCAGACAATGGGAGCTTGGATGGCAATCATAAAAAAATATTCCCCGAAGAAGCAGTGCATGAAAATTTAATTGATAATGTCGACAACGATGAGGAAATTATTGAAAAACAGTTTTCTCAAGAAGATTGCAGCACCGCTGAAGGTAAAGATGAAATAGATGCATCCTCATGCTCCTTAGACAATAGCCGAAGTGAACAGGATGGAGCATCTTGTTCAGTTTCTTTGAAGTGTAGTTTTAAGTCAAAGAGGCATTCAGATCGGGATCTTGACAATCCTAAACCCTGCAAGTCTAGAAAACCGATTAGCGATGGCTTATTATTGTCTTCCAAATACAGTAAAATTTCATTTTGTGGTACGGAGGACCATCTATCAGATGGCTTTTATGACGCGGGACGTGATCGACCGTTTATGCCTCTTGAGAGTTATGAGCAAAATCAGTGTCTTACTTCTCGTGAAGTCATTCTGTTAGACAGACATAGGGATGAACAATTGGATGCCATTATTCTATCAGCTCAGGCATTGGTATCTAATTTAAAGCAGTTAAATGGTTTAAACAAACCTGGGAGCCAGGGTGAAGTTGATAACTTGCAGACAGCATCACTGCTTGCACTCTTTGTATCCGATCATTTTGGTGGAAGTGATAGAGGTGGTATTATAGAAAGGGCACGCAAATCTGTTTCTGGCTCAAACTATAATAAGCCTTTTGTCTGTACATGTTCAGCAGGAAGCAGCACGAGTATAAATGCTTCAACTGAACCAGTTGTGAATGCGATAGGAAATATTAATCTTTCTAGGATCTCTGAAAAATCTCTTGATTCTGTTAAAAAAAGGCGAAATTCAATCATTGTTCCGATTGGCTCTGTTCAGTATGGTGTTTGTAGGCATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATGGAGCCACCTGTACCTTGTGAGCTTGTTAGGGGTTACCTGGATTTTTCACCCCATGCTTGGAATATCATTTTGATAAAAAGGGGTGTTACATGGGTTCGAATGCTTGTTGATGCCTGCCGACCTCATGATATTAGAGAAGAGAAAGATCCAGAATATTTCTGCAGGTACATACCTCTTCGTCGAACCCAGATTCCTCTTTCGACTAGCATTCTTCCTAGTCCTGATTATTCCTTTCCATCTCTGTCTAATTGTGATGAACTTGAGAAAAAAGCTTTAACTACATTAGTTCGGTGCAAATATGGATCAGTTGAGGCTGCAGTGAAGGTGCGTACTTTGGAGGTACAGGAAAGTTCAGCAGACAAAATAAAAAACTTTGAATATAATTCTTTGGGAGAAATCAGAATTCTCGGTGCTTTCAAACATCCCTGTATAGTGGAAATATATGGACACCAAATATCATGTAAATGGACCATCTCAGCTGATGGTAATCCCGAGCATCGTGTGTTGAGATCTGCAATTTATATGGAATATGTGGAAGGAGGCTCCTTAAAAACCTATCTTGAAGAGTTGTCAAAAGCTGGTCAAAAGCATGTACCTGTGGAGTTAGCCTTGTATATTGCCAAAGATGTATCATGTGCTTTGTCAGAGCTGCATTCAAAGCACATAATTCACCGTGACATAAAAAGCGAAAACATTTTGTTTGATTGTGATAGGAAGAGAGATGATGGAACTCCCACCGTGAAGCTATGTGATTTTGATAGTGCAGTGCCATTAAGATCACCTTTACATGCATGCTGTATTGCACATGTAGGAACACCTCCTCCTTGTGTGTGTGTTGGAACACCTCGATGGATGGCTCCAGAGGTCATGCGGACTATGTATGAAAAAAGCACTTACGGATTGGAAGCTGATATTTGGTCATTTGGATGTTTACTTCTGGAGATGCTGACTTTGCAAATTCCATATTTTGGAGTACCTGATTCACACGTCCATGATAGTCTGCAGATGGGTAAACGACCACAACTAACTGATGAGCTGGAGGCGTGTGTCGAAGAAAATCCAAATGATCGACCTACTGCCGAAGAAATCCATGAAATGCTGCTTGGACACACAAGGCACATACAAGTTCAAACCGTTAGGGAGATTTAA 3201 0.4146 MELLHSDETVSEDADIPEDNNTPNDSPDPTAGIEDGATLDVSGKNLEFPVPENSKDDAVESLYMYKNVYSLIPKSVGGLVRLKTLKFFGNEINLFAPEFGNMTRLERLQMKVSSPGIGGLPLHKLKGLKELELSKGPSRPSAFPILTEIAALKCLTKLCICHFSIRYLPPEIECLKKLEYLDLSFNKLKTLPSEISSLEVLITMKVANNKLVELPPAMKSLSRLENLDLSNNRLTSLGSLELSSMNRLQNLNLQCFTWRDRIGGAFVHPSIFQIPSWICCNMEGNDGDRCKDNYISSSVEMDVYESNLQENEETFSHGPHNTSSSVLTNSSSNSRCFSAWKSGKRWKRRHYKQQKARQEQKARQERLNNSRKWKETVPDNGSLDGNHKKIFPEEAVHENLIDNVDNDEEIIEKQFSQEDCSTAEGKDEIDASSCSLDNSRSEQDGASCSVSLKCSFKSKRHSDRDLDNPKPCKSRKPISDGLLLSSKYSKISFCGTEDHLSDGFYDAGRDRPFMPLESYEQNQCLTSREVILLDRHRDEQLDAIILSAQALVSNLKQLNGLNKPGSQGEVDNLQTASLLALFVSDHFGGSDRGGIIERARKSVSGSNYNKPFVCTCSAGSSTSINASTEPVVNAIGNINLSRISEKSLDSVKKRRNSIIVPIGSVQYGVCRHRALLFKYLCDHMEPPVPCELVRGYLDFSPHAWNIILIKRGVTWVRMLVDACRPHDIREEKDPEYFCRYIPLRRTQIPLSTSILPSPDYSFPSLSNCDELEKKALTTLVRCKYGSVEAAVKVRTLEVQESSADKIKNFEYNSLGEIRILGAFKHPCIVEIYGHQISCKWTISADGNPEHRVLRSAIYMEYVEGGSLKTYLEELSKAGQKHVPVELALYIAKDVSCALSELHSKHIIHRDIKSENILFDCDRKRDDGTPTVKLCDFDSAVPLRSPLHACCIAHVGTPPPCVCVGTPRWMAPEVMRTMYEKSTYGLEADIWSFGCLLLEMLTLQIPYFGVPDSHVHDSLQMGKRPQLTDELEACVEENPNDRPTAEEIHEMLLGHTRHIQVQTVREI 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02689 1066 Gene3D Transferase(Phosphotransferase) domain 1 764 1065 - -
Vifa6g02689 1066 Pfam Ethylene-responsive protein kinase Le-CTR1 642 721 - -
Vifa6g02689 1066 MobiDBLite consensus disorder prediction 1 38 - -
Vifa6g02689 1066 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 105 1057 - -
Vifa6g02689 1066 SUPERFAMILY Protein kinase-like (PK-like) 779 1053 IPR011009 -
Vifa6g02689 1066 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Vifa6g02689 1066 SUPERFAMILY RNI-like 39 289 - -
Vifa6g02689 1066 MobiDBLite consensus disorder prediction 347 387 - -
Vifa6g02689 1066 SMART LRR_sd22_2 221 242 - -
Vifa6g02689 1066 SMART LRR_sd22_2 175 200 - -
Vifa6g02689 1066 Coils Coil 348 368 - -
Vifa6g02689 1066 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Vifa6g02689 1066 MobiDBLite consensus disorder prediction 357 387 - -
Vifa6g02689 1066 SMART serkin_6 769 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02689 1066 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Vifa6g02689 1066 Gene3D Ribonuclease Inhibitor 20 289 IPR032675 -
Vifa6g02689 1066 PRINTS Leucine-rich repeat signature 221 234 - -
Vifa6g02689 1066 PRINTS Leucine-rich repeat signature 178 191 - -
Vifa6g02689 1066 Pfam Protein kinase domain 799 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02689 1066 SMART LRR_bac_2 221 240 - -
Vifa6g02689 1066 SMART LRR_bac_2 175 194 - -
Vifa6g02689 1066 SMART LRR_bac_2 198 217 - -
Vifa6g02689 1066 FunFam Leucine-rich repeat protein kinase family protein 811 1034 - -
Vifa6g02689 1066 ProSiteProfiles Protein kinase domain profile. 773 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02689 1066 SMART LRR_typ_2 79 101 IPR003591 -
Vifa6g02689 1066 SMART LRR_typ_2 175 198 IPR003591 -
Vifa6g02689 1066 SMART LRR_typ_2 221 244 IPR003591 -
Vifa6g02689 1066 MobiDBLite consensus disorder prediction 311 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02689 Vifa-Chr6 919088292 919098700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02689 771 1051 MAP Kinase Kinase Kinase AT2G24360 27.931 2.32e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Vifa6g02689 Pkinase 6.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02689 - - gmx:100819959 1595.87