Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02688 ATGGAGCTTCTCCACTCCGACGAAACCGTATCGGAAGATGCCGATATTCCTGAAGACAACAACACCCCGAACGATTCCCCGGACCCCACCGCCGGGATCGAAGACGGCGCGACTCTCGATGTATCGGGAAAGAACTTGGAGTTTCCGGTGCCGGAGAATTCTAAAGACGACGCCGTGGAGAGTTTATACATGTACAAGAACGTTTACAGTTTGATTCCGAAGTCGGTGGGTGGTCTCGTAAGGTTGAAAACGCTGAAATTCTTTGGGAATGAGATTAACTTGTTCGCGCCGGAGTTCGGTAATATGACGAGGTTGGAGCGGTTGCAGATGAAAGTGTCTTCGCCTGGAATTGGTGGGTTGCCGTTGCATAAATTGAAGGGTTTGAAAGAGCTTGAGCTTTCCAAAGGTCCTTCAAGACCTTCTGCGTTTCCCATATTGACTGAGATTGCTGCTCTCAAGTGTTTGACCAAACTTTGCATTTGTCACTTCTCTATAAGATACCTTCCTCCGGAAATTGAGTGCTTAAAGAAATTGGAGTATCTTGATCTTTCATTCAATAAATTGAAGACATTGCCCTCAGAGATTAGTTCTTTGGAAGTATTAATAACCATGAAAGTTGCTAATAATAAGTTGGTGGAATTACCGCCTGCTATGAAATCACTATCAAGGCTGGAGAATCTGGACCTGTCAAATAATAGGTTGACTTCGTTAGGATCGCTTGAACTTAGCTCAATGAATAGACTTCAGAACTTAAATCTTCAGTACAACAAGCTGTCCAGCATTTTTCAAATTCCTTCATGGATATGCTGTAATATGGAAGGAAATGATGGAGATAGATGCAAAGACAATTATATCAGCTCTTCTGTTGAAATGGATGTCTATGAGAGCAATTTACAGGAAAATGAGGAAACATTTTCTCATGGACCTCATAACACCTCATCTAGCGTATTAACAAACTCCTCATCTAACAGTAGATGTTTTTCAGCCTGGAAGTCGGGTAAACGGTGGAAGCGGCGGCACTATAAACAGCAGAAAGCTCGTCAAGAACAGAAAGCTCGTCAAGAGCGGTTGAATAACAGCAGGAAATGGAAAGAAACTGTACCAGACAATGGGAGCTTGGATGGCAATCATAAAAAAATATTCCCCGAAGAAGCAGTGCATGAAAATTTAATTGATAATGTCGACAACGATGAGGAAATTATTGAAAAACAGTTTTCTCAAGAAGATTGCAGCACCGCTGAAGGTAAAGATGAAATAGATGCATCCTCATGCTCCTTAGACAATAGCCGAAGTGAACAGGATGGAGCATCTTGTTCAGTTTCTTTGAAGTGTAGTTTTAAGTCAAAGAGGCATTCAGATCGGGATCTTGACAATCCTAAACCCTGCAAGTCTAGAAAACCGATTAGCGATGGCTTATTATTGTCTTCCAAATACAGTAAAATTTCATTTTGTGGTACGGAGGACCATCTATCAGATGGCTTTTATGACGCGGGACGTGATCGACCGTTTATGCCTCTTGAGAGTTATGAGCAAAATCAGTGTCTTACTTCTCGTGAAGTCATTCTGTTAGACAGACATAGGGATGAACAATTGGATGCCATTATTCTATCAGCTCAGGCATTGGTATCTAATTTAAAGCAGTTAAATGGTTTAAACAAACCTGGGAGCCAGGGTGAAGTTGATAACTTGCAGACAGCATCACTGCTTGCACTCTTTGTATCCGATCATTTTGGTGGAAGTGATAGAGGTGGTATTATAGAAAGGGCACGCAAATCTGTTTCTGGCTCAAACTATAATAAGCCTTTTGTCTGTACATGTTCAGCAGGAAGCAGCACGAGTATAAATGCTTCAACTGAACCAGTTGTGAATGCGATAGGAAATATTAATCTTTCTAGGATCTCTGAAAAATCTCTTGATTCTGTTAAAAAAAGGCGAAATTCAATCATTGTTCCGATTGGCTCTGTTCAGTATGGTGTTTGTAGGCATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATGGAGCCACCTGTACCTTGTGAGCTTGTTAGGGGTTACCTGGATTTTTCACCCCATGCTTGGAATATCATTTTGATAAAAAGGGGTGTTACATGGGTTCGAATGCTTGTTGATGCCTGCCGACCTCATGATATTAGAGAAGAGAAAGATCCAGAATATTTCTGCAGGTACATACCTCTTCGTCGAACCCAGATTCCTCTTTCGACTAGCATTCTTCCTAGTCCTGATTATTCCTTTCCATCTCTGTCTAATTGTGATGAACTTGAGAAAAAAGCTTTAACTACATTAGTTCGGTGCAAATATGGATCAGTTGAGGCTGCAGTGAAGGTGCGTACTTTGGAGGTACAGGAAAGTTCAGCAGACAAAATAAAAAACTTTGAATATAATTCTTTGGGAGAAATCAGAATTCTCGGTGCTTTCAAACATCCCTGTATAGTGGAAATATATGGACACCAAATATCATGTAAATGGACCATCTCAGCTGATGGTAATCCCGAGCATCGTGTGTTGAGATCTGCAATTTATATGGAATATGTGGAAGGAGGCTCCTTAAAAACCTATCTTGAAGAGTTGTCAAAAGCTGGTCAAAAGCATGTACCTGTGGAGTTAGCCTTGTATATTGCCAAAGATGTATCATGTGCTTTGTCAGAGCTGCATTCAAAGCACATAATTCACCGTGACATAAAAAGCGAAAACATTTTGTTTGATTGTGATAGGAAGAGAGATGATGGAACTCCCACCGTGAAGCTATGTGATTTTGATAGTGCAGTGCCATTAAGATCACCTTTACATGCATGCTGTATTGCACATGTAGGAACACCTCCTCCTTGTGTGTGTGTTGGAACACCTCGATGGATGGCTCCAGAGGTCATGCGGACTATGTATGAAAAAAGCACTTACGGATTGGAAGCTGATATTTGGTCATTTGGATGTTTACTTCTGGAGATGCTGACTTTGCAAATTCCATATTTTGGAGTACCTGATTCACACGTCCATGATAGTCTGCAGATGGGTAAACGACCACAACTAACTGATGAGCTGGAGGCGTGTGTCGAAGAAAATCCAAATGATCGACCTACTGCCGAAGAAATCCATGAAATGCTGCTTGGACACACAAGGCACATACAAGTTCAAACCGTTAGGGAGATTTAA 3171 0.4131 MELLHSDETVSEDADIPEDNNTPNDSPDPTAGIEDGATLDVSGKNLEFPVPENSKDDAVESLYMYKNVYSLIPKSVGGLVRLKTLKFFGNEINLFAPEFGNMTRLERLQMKVSSPGIGGLPLHKLKGLKELELSKGPSRPSAFPILTEIAALKCLTKLCICHFSIRYLPPEIECLKKLEYLDLSFNKLKTLPSEISSLEVLITMKVANNKLVELPPAMKSLSRLENLDLSNNRLTSLGSLELSSMNRLQNLNLQYNKLSSIFQIPSWICCNMEGNDGDRCKDNYISSSVEMDVYESNLQENEETFSHGPHNTSSSVLTNSSSNSRCFSAWKSGKRWKRRHYKQQKARQEQKARQERLNNSRKWKETVPDNGSLDGNHKKIFPEEAVHENLIDNVDNDEEIIEKQFSQEDCSTAEGKDEIDASSCSLDNSRSEQDGASCSVSLKCSFKSKRHSDRDLDNPKPCKSRKPISDGLLLSSKYSKISFCGTEDHLSDGFYDAGRDRPFMPLESYEQNQCLTSREVILLDRHRDEQLDAIILSAQALVSNLKQLNGLNKPGSQGEVDNLQTASLLALFVSDHFGGSDRGGIIERARKSVSGSNYNKPFVCTCSAGSSTSINASTEPVVNAIGNINLSRISEKSLDSVKKRRNSIIVPIGSVQYGVCRHRALLFKYLCDHMEPPVPCELVRGYLDFSPHAWNIILIKRGVTWVRMLVDACRPHDIREEKDPEYFCRYIPLRRTQIPLSTSILPSPDYSFPSLSNCDELEKKALTTLVRCKYGSVEAAVKVRTLEVQESSADKIKNFEYNSLGEIRILGAFKHPCIVEIYGHQISCKWTISADGNPEHRVLRSAIYMEYVEGGSLKTYLEELSKAGQKHVPVELALYIAKDVSCALSELHSKHIIHRDIKSENILFDCDRKRDDGTPTVKLCDFDSAVPLRSPLHACCIAHVGTPPPCVCVGTPRWMAPEVMRTMYEKSTYGLEADIWSFGCLLLEMLTLQIPYFGVPDSHVHDSLQMGKRPQLTDELEACVEENPNDRPTAEEIHEMLLGHTRHIQVQTVREI 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02688 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Vifa6g02688 1056 Gene3D Ribonuclease Inhibitor 20 288 IPR032675 -
Vifa6g02688 1056 ProSiteProfiles Leucine-rich repeat profile. 247 268 IPR001611 GO:0005515
Vifa6g02688 1056 SUPERFAMILY Protein kinase-like (PK-like) 769 1043 IPR011009 -
Vifa6g02688 1056 MobiDBLite consensus disorder prediction 1 38 - -
Vifa6g02688 1056 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Vifa6g02688 1056 SMART LRR_sd22_2 245 266 - -
Vifa6g02688 1056 SMART LRR_sd22_2 221 242 - -
Vifa6g02688 1056 SMART LRR_sd22_2 175 200 - -
Vifa6g02688 1056 Pfam Protein kinase domain 789 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02688 1056 ProSiteProfiles Protein kinase domain profile. 763 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02688 1056 SMART LRR_typ_2 79 101 IPR003591 -
Vifa6g02688 1056 SMART LRR_typ_2 175 198 IPR003591 -
Vifa6g02688 1056 SMART LRR_typ_2 245 271 IPR003591 -
Vifa6g02688 1056 SMART LRR_typ_2 221 244 IPR003591 -
Vifa6g02688 1056 MobiDBLite consensus disorder prediction 337 377 - -
Vifa6g02688 1056 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Vifa6g02688 1056 Coils Coil 338 358 - -
Vifa6g02688 1056 MobiDBLite consensus disorder prediction 301 325 - -
Vifa6g02688 1056 MobiDBLite consensus disorder prediction 347 377 - -
Vifa6g02688 1056 PRINTS Leucine-rich repeat signature 178 191 - -
Vifa6g02688 1056 PRINTS Leucine-rich repeat signature 221 234 - -
Vifa6g02688 1056 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 105 1047 - -
Vifa6g02688 1056 Pfam Ethylene-responsive protein kinase Le-CTR1 632 711 - -
Vifa6g02688 1056 FunFam Leucine-rich repeat protein kinase family protein 48 291 - -
Vifa6g02688 1056 SMART LRR_bac_2 221 240 - -
Vifa6g02688 1056 SMART LRR_bac_2 175 194 - -
Vifa6g02688 1056 SMART LRR_bac_2 198 217 - -
Vifa6g02688 1056 Pfam Leucine rich repeat 203 258 IPR001611 GO:0005515
Vifa6g02688 1056 SUPERFAMILY L domain-like 39 266 - -
Vifa6g02688 1056 Gene3D Transferase(Phosphotransferase) domain 1 754 1055 - -
Vifa6g02688 1056 FunFam Leucine-rich repeat protein kinase family protein 801 1024 - -
Vifa6g02688 1056 SMART serkin_6 759 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02688 Vifa-Chr6 919088292 919098700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02688 761 1041 MAP Kinase Kinase Kinase AT2G24360 27.931 2.17e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Vifa6g02688 Pkinase 6.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02688 - - gmx:100819959 1613.2