Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02687 ATGTCCTCATGCGTCACTATTCTTCGAACATCTCTCATCTTCCAACTTCGAACATCTCTCATCTTCCAACCGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTCTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGTATATGATGTCTTCTAA 723 0.3983 MSSCVTILRTSLIFQLRTSLIFQPVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGSVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQVYDVF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02687 240 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 112 IPR014001 -
Vifa6g02687 240 Gene3D - 120 237 IPR027417 -
Vifa6g02687 240 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 133 240 IPR001650 -
Vifa6g02687 240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 236 IPR027417 -
Vifa6g02687 240 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 49 58 IPR002464 -
Vifa6g02687 240 Pfam Helicase conserved C-terminal domain 150 236 IPR001650 -
Vifa6g02687 240 Gene3D - 6 110 IPR027417 -
Vifa6g02687 240 PANTHER DNA HELICASE RECQ FAMILY MEMBER 23 235 - -
Vifa6g02687 240 SMART helicmild6 163 238 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02687 Vifa-Chr6 918953490 918955620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02687 153 234 Eukaryotic Initiation Factors Gene Family AT3G19760 29.268 2.81e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02687 K10730 - gmx:100811214 338.961