Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02681 ATGGATGATTATAGCCAAGGGGCATTATCGTCATCTTACTACACTGTTCTTGGTGTTAGTTCAGATTCTTCTATAAACGAAATAAGGCGTGCATACAGAAAGCTTGCTTTGCAATGGCATCCAGATAGATGGACAAGAACGCCTTCTTTACTTAATGAAGCCAAATGTAAATTCCAGAAAATTCAAGAAGCTTATTCAGTGCTATCTGATCCGAAGAGGAGAACTATGTATGATGCTGGATTGTATGATCCTCAAGAGGAAGAGGATGAGGAATTTAGTGACTTTATGGACGAAATGGCGTCCCTTATGGTGGAAGTTAAGCGAGAGGAGAAGGTTTATGGTTTGGATGAGTTGCAGGCCATGTTCATGGAAATGGCTGAAGGATTTGAGACTCCTTCTATGTATTTTGGGACACCAACTAGGGTTGATGAATCTTGTGTTACATAG 447 0.4049 MDDYSQGALSSSYYTVLGVSSDSSINEIRRAYRKLALQWHPDRWTRTPSLLNEAKCKFQKIQEAYSVLSDPKRRTMYDAGLYDPQEEEDEEFSDFMDEMASLMVEVKREEKVYGLDELQAMFMEMAEGFETPSMYFGTPTRVDESCVT 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02681 148 PANTHER PUTATIVE, EXPRESSED-RELATED 10 131 - -
Vifa6g02681 148 SMART dnaj_3 11 73 IPR001623 -
Vifa6g02681 148 CDD DnaJ 13 70 IPR001623 -
Vifa6g02681 148 Gene3D DnaJ domain 6 106 IPR036869 -
Vifa6g02681 148 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Vifa6g02681 148 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vifa6g02681 148 Pfam DnaJ domain 13 78 IPR001623 -
Vifa6g02681 148 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vifa6g02681 148 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vifa6g02681 148 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vifa6g02681 148 SUPERFAMILY Chaperone J-domain 12 84 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02681 Vifa-Chr6 915867073 915867879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02681 13 79 C2H2 Transcription Factor Family AT1G74250 51.471 5.58e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02681 - - tpra:123907280 233.032