Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02670 ATGGCCGGCGAGTTCGCCGGGGACTTCACCGGAGATAACACACCGGGGCTTCTGTGTTTGGTTCATGATATCGCCGGAATGTGTGCCGGAGGTGGAGGTGATTCGTCTTCGATTACCGCTGATGTGATGTTCAGAAAAGACTGCACCGATCTGGTGCGGCGGATCTCTCTGCTTAGTTATTTGTTTGAGGAAATTAGGGAGTTGAATAAGGTGAACTGTTCTGCTTCGAGTTCTTCAGGTGCTGTTTCTGATCCGGAGGATTCGTGGTCCTCTGATCTAGTGCTTGCTCTTCAATCTGCTAAACGGTTGTTGTCAGTTGCGATGAATTTCAACTCCAATTGCTCTTCTGATGGAGATGCAAAGAGCATTATCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAAAAACTACTAAGCAGTTTACCGTATGATGATTTAGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACACAGTTGAGACGAGCCACGGATAAATATGGGTTTATGATTTCTAAAATGCCGTCTGATGACTTATCCAAGCCCCTGGCTCAAGAAATGAGTCAAGTGTTTGGTAAATCTTTGAGTGGATTGCATAGACAAAATAGTTGTCCTGAAAATCTATCAGAGCTAGGTAGCATTCCTAAAAGCAATGAAGGGAAAAGCTGCAGCACGTATGGGGCAGGGTCTCGATTGGAAAGAACAAGGAGCATCCATGCCTCTTATGAGGTTTCCTTATCGAATATAAATGCTCCTGAAAGTCAAGAAATTTCTGGGAGCAAGAACCTACCTGAAGTTAAAAAGCCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATTTCATTGGAACTAATGAGGGATCCTGTCATTGTGGCTACTGGTCAGACATATGAGAGATCTTATATACAGAGATGGATTGATTGTGGAAATACAACGTGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTCTAAGGAGCCTTGTTTCTCAGTGGTGTATAGATCATAACATTGAGCAACCAACGGGACTAACCAACGGAAAAATTAAAAAGAGTGATGGATCGTTCAGAGATGTTACAGGTGACATAGCAGCAATTGAAGCTCTGGTCCGGAAGCTCTCCTGCAGGTCCACTGAGGAGTGTAGAGCTGCTGTTGCTGAAATTCGATCACTATCCAAAAGAAGCACCGACAATAGGATACTAATTGCTGAAGTTGGAGCAATTCCAATTCTCGTCAACCTTTTAACTTCAGAAGATGCAATGACACAAGAAAACTCGGTTACTTCAATTCTCAACCTTTCTATATACGAAAACAACAAAGGACTTATAATGCTTGCTGGTGCAATTCCATCAATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCAAGAGAAAACGCGGCAGCAACACTTTTTAGCTTGTCACTTGCGGATGAGAACAAAATAATAATTGGAGCCTCCGGAGCTATATCAGCTTTGGTAGATTTGCTCCAAAACGGAAGCCCTCGAGGGAAGAAAGACGCAGCTACAGCATTGTTCAATTTATGCATATATCAAGGGAACAAGGGCAGAGCCATAAGAGCAGGAATCATCACAGCACTGTTGAAAATGCTCACAGATTCAAGCAAATCAATGGTTGACGAAGCTCTTACGATAATGTCAGTCCTCGCCAGCCACCAAGAGGCAAAGGTTTCCATAGTAAAAGCCAGCACTATACCAGTTTTAATAGATCTTTTAAGAACCGGATTGCCTCGCAACAAAGAGAACGCAGCTGCCATTTTACTTGCTCTGTGCAAGAGGGATACTGATAATCTTTCATGTATCAGTAGACTTGGTGCTGTTATACCTCTTTCTGAACTTGCTCGAACCGGTACAGAGAGAGCCAAACGGAAGGCTACTTCATTACTGGAGCATCTTCGTAAGTTACAACAGCTTTGA 1971 0.4328 MAGEFAGDFTGDNTPGLLCLVHDIAGMCAGGGGDSSSITADVMFRKDCTDLVRRISLLSYLFEEIRELNKVNCSASSSSGAVSDPEDSWSSDLVLALQSAKRLLSVAMNFNSNCSSDGDAKSIIFQFQCVTWKLEKLLSSLPYDDLDISEEVKEQVDLVRTQLRRATDKYGFMISKMPSDDLSKPLAQEMSQVFGKSLSGLHRQNSCPENLSELGSIPKSNEGKSCSTYGAGSRLERTRSIHASYEVSLSNINAPESQEISGSKNLPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLVSQWCIDHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSCRSTEECRAAVAEIRSLSKRSTDNRILIAEVGAIPILVNLLTSEDAMTQENSVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAISALVDLLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVSIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02670 656 Coils Coil 636 656 - -
Vifa6g02670 656 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Vifa6g02670 656 SUPERFAMILY ARM repeat 376 650 IPR016024 -
Vifa6g02670 656 Coils Coil 149 169 - -
Vifa6g02670 656 FunFam RING-type E3 ubiquitin transferase 355 555 - -
Vifa6g02670 656 Gene3D - 359 452 IPR011989 -
Vifa6g02670 656 Pfam Armadillo/beta-catenin-like repeat 407 445 IPR000225 GO:0005515
Vifa6g02670 656 Pfam Armadillo/beta-catenin-like repeat 489 527 IPR000225 GO:0005515
Vifa6g02670 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 500 IPR000225 GO:0005515
Vifa6g02670 656 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Vifa6g02670 656 Gene3D - 453 555 IPR011989 -
Vifa6g02670 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 350 IPR013083 -
Vifa6g02670 656 FunFam RING-type E3 ubiquitin transferase 556 655 - -
Vifa6g02670 656 Pfam U-box domain 277 347 IPR003613 GO:0004842|GO:0016567
Vifa6g02670 656 FunFam RING-type E3 ubiquitin transferase 276 351 - -
Vifa6g02670 656 SUPERFAMILY RING/U-box 276 351 - -
Vifa6g02670 656 SMART arm_5 570 610 IPR000225 GO:0005515
Vifa6g02670 656 SMART arm_5 447 487 IPR000225 GO:0005515
Vifa6g02670 656 SMART arm_5 406 446 IPR000225 GO:0005515
Vifa6g02670 656 SMART arm_5 488 528 IPR000225 GO:0005515
Vifa6g02670 656 SMART arm_5 529 569 IPR000225 GO:0005515
Vifa6g02670 656 CDD RING-Ubox_PUB 278 330 IPR045210 -
Vifa6g02670 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Vifa6g02670 656 PANTHER U BOX DOMAIN-CONTAINING 43 652 - -
Vifa6g02670 656 Gene3D - 556 655 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02670 Vifa-Chr6 912456098 912458822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02670 43 655 U-box Gene Family AT1G23030 61.874 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02670 - - gmx:100815448 1050.04