Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02651 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGGCGGGTCCTAACGGTGGTGCTGCGGCGGCAGCAGCGGCTGCGGCTGCGGCTGGTGGGAATCAGTTTGTGACGACTTCGCTTTACGTTGGAGATCTTGACGTCAATGTTACGGATTCTCAGCTTTATGACCTTTTTAATCAATTGGGTCAGGTTGTGTCTGTTAGGGTTTGCAGGGATTTGACCACTAGGAGGTCACTTGGTTATGGTTATGTGAACTACAGCAACCCTCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTTTGAACAACAGGCCCATTCGTATTATGTATTCACACCGTGATCCCAGCATCCGCAAAAGTGGTCAAGGAAATATATTTATTAAGAATTTGGACAAGGCAATTGACCATAAGGCATTGCATGATACCTTTTCTACATTTGGGAGTATCCTTTCTTGCAAGGTAGCTGTTGATGGATCTGGCCAATCAAAAGGTTACGGCTTTGTTCAATTTGACAGTGAGGAGGCTGCTCAAAAAGCTATTGAAAAGCTTAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAGACTACAGCTGACAGGGCAAAATTCAACAATGTTTTTGTTAAGAATCTATCGGAAACAACCACCGATGATGAGTTGAAGCAGATTTTTGGAGAATTTGGAACAATTACCAGTGCTGTAGTAATGAGGGATGGGGATGGGAAATCAAAGTGTTTTGGATTTGTAAACTTTGAGAGTACCGATGATGCTGCCAGGGCTGTTGAGGCTCTTAATGGAAAGAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAGAAGAAATCTGAAAGGGAGCATGAACTGAAACAAAAATTTGAGCAGAGCATGAAGGAAGCCGCTGATAAATATCAAGGGGCAAACCTGTATGTCAAAAATTTGGATGATAGCATTGTTGATGACAAACTTAAGGAGCTGTTCTCCTCTTATGGTACAATTACCTCTTGCAAGGTAATGAGAGACCCCAATGGCATAAGTCGAGGATCTGGGTTTGTTGCATTCTCTACTCCTGAGGAGGCATCTAGAGCACTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTGGCCCAGCGGAAAGAAGATAGAAGAGCTAGGCTGCAGGCTCAATTTGCTCAAATGCGTCCTGTTGCGATGCCCCAATCTGTTGCTCCTCGCATGCCTATGTATCCCCCTGGTGGTCCAGGTATGGGTCAACAAATATTTTATGGCCAAGGCCCTCCTGCCATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTGCCTGGAATGAGGCCTGGTGGGGGTCCAGTGCCAAATTACTTTGTGCCAATGGTTCAGCAAGGGCAGCGTCCTGGTGGAAGACGTGGAGGTGCAGTCCAGCAGTCCCAGCAGCCAGTTCCTCTTATGCCACAGCAGATGCTTCCTAGGGGGCGTATGTATCGCTATCCTTCTGGTAGGGGCATGCCTGATGGTCCCATGGCTGGAGTGGCTGGAGGCATGTATTCTGTTCCTTATGATGTGGGTGGGATGCCCCTTCGTGATGCATCACTTTCACAGCAAATTCCCATTGGTGCTTTGGCTTCTCATCTGGCTAATGCATCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCGCTTGTGGAACAGTTGGAGCCTGACAATGCTGCCAAAGTTACTGGCATGCTTCTGGAGATGGACCAGACTGAAGTTTTGCACTTACTTGAGTCACCAGAAGCCCTGAAAGCAAAGGTGGCAGAGGCAATGGATGTCCTTAGGAATGTTGCACAGCAGCAGGCTGGCGGTGCTGCTGATCAGTTGTCTTCATTGTCACTTAATGACAGCCTTGTTTCTTAA 1965 0.4707 MAQVQVQPQNAMAGPNGGAAAAAAAAAAAGGNQFVTTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSTFGSILSCKVAVDGSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERETTADRAKFNNVFVKNLSETTTDDELKQIFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPQSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGGPVPNYFVPMVQQGQRPGGRRGGAVQQSQQPVPLMPQQMLPRGRMYRYPSGRGMPDGPMAGVAGGMYSVPYDVGGMPLRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLSSLSLNDSLVS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02651 654 Gene3D - 201 300 IPR012677 -
Vifa6g02651 654 Gene3D - 552 635 - -
Vifa6g02651 654 SUPERFAMILY RNA-binding domain, RBD 216 400 IPR035979 GO:0003676
Vifa6g02651 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 197 IPR000504 GO:0003723
Vifa6g02651 654 FunFam Polyadenylate-binding protein 207 301 - -
Vifa6g02651 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 38 629 IPR006515 GO:0003723
Vifa6g02651 654 SUPERFAMILY PABC (PABP) domain 497 646 IPR036053 GO:0003723
Vifa6g02651 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Vifa6g02651 654 Gene3D - 301 404 IPR012677 -
Vifa6g02651 654 PANTHER RNA BINDING PROTEIN 36 99 - -
Vifa6g02651 654 FunFam Polyadenylate-binding protein 123 206 - -
Vifa6g02651 654 SMART poly_2 568 631 IPR002004 GO:0003723
Vifa6g02651 654 FunFam Polyadenylate-binding protein 302 407 - -
Vifa6g02651 654 FunFam Polyadenylate-binding protein 23 122 - -
Vifa6g02651 654 CDD RRM1_I_PABPs 38 117 IPR034364 -
Vifa6g02651 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 556 633 IPR002004 GO:0003723
Vifa6g02651 654 CDD RRM3_I_PABPs 215 294 - -
Vifa6g02651 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Vifa6g02651 654 SMART rrm2_1 217 289 IPR003954 GO:0003676
Vifa6g02651 654 SMART rrm2_1 320 392 IPR003954 GO:0003676
Vifa6g02651 654 SMART rrm2_1 38 111 IPR003954 GO:0003676
Vifa6g02651 654 SMART rrm2_1 126 198 IPR003954 GO:0003676
Vifa6g02651 654 Pfam Poly-adenylate binding protein, unique domain 564 628 IPR002004 GO:0003723
Vifa6g02651 654 SUPERFAMILY RNA-binding domain, RBD 37 206 IPR035979 GO:0003676
Vifa6g02651 654 Gene3D - 26 125 IPR012677 -
Vifa6g02651 654 FunFam Polyadenylate-binding protein 552 634 - -
Vifa6g02651 654 CDD RRM4_I_PABPs 318 396 - -
Vifa6g02651 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 293 IPR000504 GO:0003723
Vifa6g02651 654 CDD RRM2_I_PABPs 123 199 IPR045305 -
Vifa6g02651 654 Gene3D - 126 198 IPR012677 -
Vifa6g02651 654 SMART rrm1_1 126 198 IPR000504 GO:0003723
Vifa6g02651 654 SMART rrm1_1 217 289 IPR000504 GO:0003723
Vifa6g02651 654 SMART rrm1_1 38 111 IPR000504 GO:0003723
Vifa6g02651 654 SMART rrm1_1 320 392 IPR000504 GO:0003723
Vifa6g02651 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 389 IPR000504 GO:0003723
Vifa6g02651 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 286 IPR000504 GO:0003723
Vifa6g02651 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
Vifa6g02651 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02651 Vifa-Chr6 906976899 906982416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02651 36 653 Eukaryotic Initiation Factors Gene Family AT1G49760 75.277 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02651 K13126 - gmx:100813735 1095.88