Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02649 ATGGCAGAAACAATGTTTATTGAGAAAACTCTTATTTTTCCGACAATAAGAAGAACAACAAGAACTTGTCTTCCTCTCACATTTCTTGACTTGCCTTTTGCAGGTCCAAAATATGTTGAACGCCAATTCTTTTATAACTTTCCTCATTCAACCAATTATTTTATCCAAACAACACTTCCATCTCTCAAACACTCTCTTTCTCTTACACTTCAATATTTCTTCCCCCTTGTTGGAAATCTCCATTGTTCTCCACCACCCCACAAACCTTTTATTCTTTGCACCCAAAATGATGCTTTATCTTTTACCGTCATTGAGTCCTCAGCTGATTTCAACCATCTCTCAACCAATCACCACCCAAAAAGGCTCAAAGATTTTAGTCATCTTGTTCCAAAATTAACACAAAAAATAGACCTTGATGACAATGACACATTAATATTTTCATTGTTGGCTTTGCAAGTATCTGTTTTCCCCAACCATGGCCTTTGTATTGCCATCACATATTGCCATGTGATGGATGATTATTTTTGCAATTATTTTATGAAATTTTGGTCTTTTATCCATAAAAAAGGTGAACTTGTTGACATGAAGTCACTACCTTGTTTTGACAGACAAGTCTTGAGAGATCCAAAAGGGCTAGAGGATATTCTATTAAAAGGATATTTTGAACAGTGGAAAATGTGGAAGAATAGATTCCTTATTCAAAGTCAAACTACAGAAGAAGAACATCAAGACTATGTTAAGACAACTATTGTTTTTACAAAAGAAGAAATTGAGGAGATGAAAATATGGATACTTAATAAATGGAATGTCGATTATCATGATATTAAAGCACCAAAATTTATATCTAAATTTGTTATAATATGTGGTTTTGTTTGGTCCAATGTAGTTAAAACAATAAATAGAAATAACGACGATAAAGAAGATGAAAAAGATGAGTATTTTTGTTTCGTAGGTGATTGCAGAGAAAGACTAGGGTATCCAATACCAGAGGGTTATTTTGGGAATTGTTTAACTTTATGTGTAGCAACTGTGAAGAGAAAGGATATAAAAGGAGAATATGGTTTTTTGAATGCTGCTAAAGCCATTCAAAATGCAATAACAGAGATGAAAAGTGATCCACTGAAAAATGCAGAAGAATGGGATGTTATGTTTAAAAAGGTTTTTATGTCTGGAGCTCATTTGTTGGTAAGTGGATCTCCTAAGTTTAATGTTTATGAAACAAATTTTGGATTTGGAAATCCTATTAAAGTTGAGATGATGATGCATTCATCAAAGGATATGTCTCTTGCTGAAAGTAGAGACAAAAAAGGGGGACTTGAGGTTGGGTTGGCATTTAAAACAGAAGAATTACAAGATTTATATTTTTTCATTGAACAAGGACTTGAAGCTTTGAAATTCTAA 1401 0.3291 MAETMFIEKTLIFPTIRRTTRTCLPLTFLDLPFAGPKYVERQFFYNFPHSTNYFIQTTLPSLKHSLSLTLQYFFPLVGNLHCSPPPHKPFILCTQNDALSFTVIESSADFNHLSTNHHPKRLKDFSHLVPKLTQKIDLDDNDTLIFSLLALQVSVFPNHGLCIAITYCHVMDDYFCNYFMKFWSFIHKKGELVDMKSLPCFDRQVLRDPKGLEDILLKGYFEQWKMWKNRFLIQSQTTEEEHQDYVKTTIVFTKEEIEEMKIWILNKWNVDYHDIKAPKFISKFVIICGFVWSNVVKTINRNNDDKEDEKDEYFCFVGDCRERLGYPIPEGYFGNCLTLCVATVKRKDIKGEYGFLNAAKAIQNAITEMKSDPLKNAEEWDVMFKKVFMSGAHLLVSGSPKFNVYETNFGFGNPIKVEMMMHSSKDMSLAESRDKKGGLEVGLAFKTEELQDLYFFIEQGLEALKF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02649 466 Gene3D - 6 231 IPR023213 -
Vifa6g02649 466 Pfam Transferase family 6 451 - -
Vifa6g02649 466 Gene3D - 242 463 IPR023213 -
Vifa6g02649 466 PANTHER - 18 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02649 Vifa-Chr6 906422812 906424212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02649 43 451 Monolignol Biosynthesis Gene Families AT5G48930 21.934 3.49e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02649 - - tpra:123894642 600.127