Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02629 ATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGATGTTGATAACATGTCATATGAGGAATTGTTGGCACTGGGGGAGCGTATAGGAGACGTAAGCACTGGACTGAACGAAGATATAATTCATAAGTTGATGAAACAGCGATTTTACACATCTCTGATGACAGAGTCGTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAAGAATATACTGATGGGCAGAAAATTGGTTCGCTCGATTGTGGGCATGAGTTCCACAGTAACTGCATCAAGCAGTGGCTAATGCAGAAGAATATGTGCCCAATTTGCAAAACAACAGCCTTGGCCACGTGA 339 0.4425 MAEMHDRHREMRLDVDNMSYEELLALGERIGDVSTGLNEDIIHKLMKQRFYTSLMTESSSDLEPCCICQEEYTDGQKIGSLDCGHEFHSNCIKQWLMQKNMCPICKTTALAT 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02629 112 FunFam E3 ubiquitin-protein ligase MBR2 32 110 - -
Vifa6g02629 112 SMART ring_2 65 105 IPR001841 -
Vifa6g02629 112 ProSiteProfiles Zinc finger RING-type profile. 65 106 IPR001841 -
Vifa6g02629 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 110 IPR013083 -
Vifa6g02629 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 110 IPR045191 GO:0061630
Vifa6g02629 112 SUPERFAMILY RING/U-box 47 109 - -
Vifa6g02629 112 Pfam Ring finger domain 65 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02629 Vifa-Chr6 903664330 903664849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02629 1 112 C3H Transcription Factor Family AT2G15530 69.565 2.99e-55 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02629 - K19041 gmx:100809024 208.764