Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02628 ATGAGTATGAGTGTAGATCGTGATCAATATGCCAATGCCGATTTTATGTGGAAAAATCAATCATGGGGTGATGTTACAAATTCACAAAATTTAGGTGAGAGTAGCGATCAAAAGTTAAGTAGGAAATCAATAAATCAGAAATGTGGTATTAATGAAGGAGAAGTTCTAGTAAATAAGAAACGAAGTCGAGGTGGAGTTGTGATTAGAACTGAAAATGACATTACAAATGAGAAAGAGAAAGAGAAAGATGGAAAGTATCGCAATTCTAATAAAGAAGTGCATATAATGAATGAGAGAGACAGGAGAAAGAAAATGAAGAATCTTTTCGCCAATCTTCATGCCTTACTTCCTGAACTACCTTCTAAGGCTGATAAATCATCAATTGTGGATGCGGCTGTGGAAAAAATAATCAATCTAAAACAAGTTTTTGAACAACTAGAAAACAAGAAGCAAGAAAAGCTGAAATCAGTATCCAAATTTGGGACTGAGTCGTCATTTATGAGGAACTCACACTTGCAACCCTTTGAATCAAGGGAAGCAATTGCAGCTGATCAAATATCGTTAAGTTATAATAATAACTTTCCTACTAGTATAATGGAACCTCCACCACAAAAAGTAGCTTTTAATACATGGTCTTTTCCAAATGTTGTCTTGAACGTTTGTGGCGACGTAGCACAATTTTGCATTTGTGCAACTAAGAAGTCTTGCTTCTTGACAACAATTTCTTTTATATTGGAGAAGTATAGGATCGATGTTGTTTCTGCCCATATTATGTTTAATGAAAATGGACGTTTCTACATGATTCATATTCAGGCAAAACAAGGTTCACTGGACATAAGTTCCATGGAGCAAATTTACAATCAAGCAGCTAGGGAAATTATGGCGTGGATCTCTTAA 897 0.3501 MSMSVDRDQYANADFMWKNQSWGDVTNSQNLGESSDQKLSRKSINQKCGINEGEVLVNKKRSRGGVVIRTENDITNEKEKEKDGKYRNSNKEVHIMNERDRRKKMKNLFANLHALLPELPSKADKSSIVDAAVEKIINLKQVFEQLENKKQEKLKSVSKFGTESSFMRNSHLQPFESREAIAADQISLSYNNNFPTSIMEPPPQKVAFNTWSFPNVVLNVCGDVAQFCICATKKSCFLTTISFILEKYRIDVVSAHIMFNENGRFYMIHIQAKQGSLDISSMEQIYNQAAREIMAWIS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02628 298 Gene3D - 88 169 IPR036638 GO:0046983
Vifa6g02628 298 Pfam Helix-loop-helix DNA-binding domain 91 139 IPR011598 GO:0046983
Vifa6g02628 298 SMART finulus 95 145 IPR011598 GO:0046983
Vifa6g02628 298 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 39 297 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vifa6g02628 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 161 IPR036638 GO:0046983
Vifa6g02628 298 Coils Coil 129 156 - -
Vifa6g02628 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 139 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02628 Vifa-Chr6 903022315 903023453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02628 78 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.364 1.35e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g02628 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02628 - - psat:127104614 327.405