Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa6g02628 | ATGAGTATGAGTGTAGATCGTGATCAATATGCCAATGCCGATTTTATGTGGAAAAATCAATCATGGGGTGATGTTACAAATTCACAAAATTTAGGTGAGAGTAGCGATCAAAAGTTAAGTAGGAAATCAATAAATCAGAAATGTGGTATTAATGAAGGAGAAGTTCTAGTAAATAAGAAACGAAGTCGAGGTGGAGTTGTGATTAGAACTGAAAATGACATTACAAATGAGAAAGAGAAAGAGAAAGATGGAAAGTATCGCAATTCTAATAAAGAAGTGCATATAATGAATGAGAGAGACAGGAGAAAGAAAATGAAGAATCTTTTCGCCAATCTTCATGCCTTACTTCCTGAACTACCTTCTAAGGCTGATAAATCATCAATTGTGGATGCGGCTGTGGAAAAAATAATCAATCTAAAACAAGTTTTTGAACAACTAGAAAACAAGAAGCAAGAAAAGCTGAAATCAGTATCCAAATTTGGGACTGAGTCGTCATTTATGAGGAACTCACACTTGCAACCCTTTGAATCAAGGGAAGCAATTGCAGCTGATCAAATATCGTTAAGTTATAATAATAACTTTCCTACTAGTATAATGGAACCTCCACCACAAAAAGTAGCTTTTAATACATGGTCTTTTCCAAATGTTGTCTTGAACGTTTGTGGCGACGTAGCACAATTTTGCATTTGTGCAACTAAGAAGTCTTGCTTCTTGACAACAATTTCTTTTATATTGGAGAAGTATAGGATCGATGTTGTTTCTGCCCATATTATGTTTAATGAAAATGGACGTTTCTACATGATTCATATTCAGGCAAAACAAGGTTCACTGGACATAAGTTCCATGGAGCAAATTTACAATCAAGCAGCTAGGGAAATTATGGCGTGGATCTCTTAA | 897 | 0.3501 | MSMSVDRDQYANADFMWKNQSWGDVTNSQNLGESSDQKLSRKSINQKCGINEGEVLVNKKRSRGGVVIRTENDITNEKEKEKDGKYRNSNKEVHIMNERDRRKKMKNLFANLHALLPELPSKADKSSIVDAAVEKIINLKQVFEQLENKKQEKLKSVSKFGTESSFMRNSHLQPFESREAIAADQISLSYNNNFPTSIMEPPPQKVAFNTWSFPNVVLNVCGDVAQFCICATKKSCFLTTISFILEKYRIDVVSAHIMFNENGRFYMIHIQAKQGSLDISSMEQIYNQAAREIMAWIS | 298 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa6g02628 | 298 | Gene3D | - | 88 | 169 | IPR036638 | GO:0046983 | |
Vifa6g02628 | 298 | Pfam | Helix-loop-helix DNA-binding domain | 91 | 139 | IPR011598 | GO:0046983 | |
Vifa6g02628 | 298 | SMART | finulus | 95 | 145 | IPR011598 | GO:0046983 | |
Vifa6g02628 | 298 | PANTHER | BHLH DOMAIN-CONTAINING PROTEIN | 39 | 297 | IPR044278 | GO:0003700|GO:0006355|GO:0009960 | |
Vifa6g02628 | 298 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 87 | 161 | IPR036638 | GO:0046983 | |
Vifa6g02628 | 298 | Coils | Coil | 129 | 156 | - | - | |
Vifa6g02628 | 298 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 89 | 139 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa6g02628 | Vifa-Chr6 | 903022315 | 903023453 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa6g02628 | 78 | 271 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G49770 | 36.364 | 1.35e-32 | 120 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vifa6g02628 | HLH | 2.6e-08 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa6g02628 | - | - | psat:127104614 | 327.405 |