Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02624 ATGCGTGGCTCTTTACAACCGTTGGATTTAGGGATTCAGATTCCCTACCACTTCAGATGCCCAATCTCCCTAGAGCTCATGAGAGACCCTGTTACCGTCTCCACCGGTCAAACCTACGACCGTAACAGCATCGAGTCGTGGGTGAACACCGGCAACACCACGTGTCCGGTCACTAGAGTCAATCTCATCGATTTCACGTTCATTCCAAATCACACTCTTCGCCGTTTGATTCAAGAATGGTGCGTCGCCAACCGCGCTTTTGGTGTTCAGCGGATTCCAACTCCCAAACAGCCCGCAGATTCTGCTCTTGTTCGCTCCTTGCTTAACCAGTGTTCTTCCCATTCTGCGTCTACTCAAATGAAGCTAAACTCGCTTCGTCGACTCAGGTCACTCGCTCGTGACTCGGATTATAACCGTTCTTTGATTGGTTCTCTCAACGTTCGTCATGTTTTGTTACCTATTGTTTTCGACTATAACGGTTTAGACGAGATGAAAAACGAGTCACTCGCTTTGCTTGTTCTCTTCCCACTCAGTGAGGCAGAATGTGCTTCAGTTGCGGAAGATTCCGATAAGATAAACTACCTAACGAGTCTTCTTTCACATTCTTTATTCGATGTCCGAGTTAACTCGGCGGCGTTAATTGAGATCGTTGTCGCCGGAACTCACTCGGCGGAGATTAGATCTCACGTGAGCAATGTCGACGGGATCTACGACGGCATGGTTGAGATACTTAAAAACCCGATCTCGTATCCGCGTGCGCTCAAGATTGGAATCAAGGCGTTATTCGCGCTCTGCCTTGTGAAACAGACGCGTCACCGTGCTGTGGCTGCCGGTGCGCCCGCGGTGCTCGTTGATAGGCTCGCTGACTTCGAGAAGTGTGACGCGGAGAGAGCGCTGGCGACGGTGGAGTTGTTGTGCCGTGTCCCGGATGGTTGTGCGGCTTTTGCTTCTCACGCGCTTACGGTTCCGATGCTTGTGAAGATAATACTCAAGATTTCGGATCGTGCGACGGAGTACGCTGCCGGAGCGCTCATGGCGCTGTGTTCGGAATCGGAACGGTGTCAACGAGAAGCGGTTACGGCGGGGGTTTTGACTCAGCTTTTACTTCTGGTACAGAGTGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGCTGTTGCTGAAGCTACTTCGGGATTCGTGGCCTCAAGATTCCGTCGGAAATTCTGACGATTTTGCATGCAGTCATTTTGACTGA 1236 0.5121 MRGSLQPLDLGIQIPYHFRCPISLELMRDPVTVSTGQTYDRNSIESWVNTGNTTCPVTRVNLIDFTFIPNHTLRRLIQEWCVANRAFGVQRIPTPKQPADSALVRSLLNQCSSHSASTQMKLNSLRRLRSLARDSDYNRSLIGSLNVRHVLLPIVFDYNGLDEMKNESLALLVLFPLSEAECASVAEDSDKINYLTSLLSHSLFDVRVNSAALIEIVVAGTHSAEIRSHVSNVDGIYDGMVEILKNPISYPRALKIGIKALFALCLVKQTRHRAVAAGAPAVLVDRLADFEKCDAERALATVELLCRVPDGCAAFASHALTVPMLVKIILKISDRATEYAAGALMALCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSVGNSDDFACSHFD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02624 411 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Vifa6g02624 411 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Vifa6g02624 411 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Vifa6g02624 411 SUPERFAMILY RING/U-box 12 89 - -
Vifa6g02624 411 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
Vifa6g02624 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Vifa6g02624 411 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Vifa6g02624 411 CDD RING-Ubox_PUB 15 67 IPR045210 -
Vifa6g02624 411 Gene3D - 96 402 IPR011989 -
Vifa6g02624 411 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02624 Vifa-Chr6 901223145 901224380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02624 1 405 U-box Gene Family AT1G49780 64.891 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02624 - - var:108341190 649.818