Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02618 ATGTTTCTCTACAAATTTCCCTCTTTCTTGGGATTGTTACATTTTCTTGGAATGCACCTCCCTCTCCTAATGGCTGATTGCCCTTTGGATTTTACTGCTTCAAACTTTACACTGGCATCCTCTTTATGCTCTGACCAAGGTCAGCGAGGGAAATGTTGCCGCTACATTAATGCTAATATTGCGATTTCTGTTGCTCGTTTTGCTAATGCAACAAGCAACCTGGGGGTTCCTCTAAATACCTCTGACATCTGCCTCCAAACCATATCTCATACCCTGCAACATTATGGGGTTCCACAACTTGCGACAGTTTTCTGTGGATTCGGAACAAAAATCCGTGTTAATTATGAATGCAAGGGTCGAACTAGTGTCATGCAGATGCTGCAATCTCCCAGATATGTAGACGTCACAAAGCATTGCAAAGTGCCGCTTGGAAGGGAAAGTAATTGTAAGAAGTGCTTAAACGCCAGCATTGGTTATCTGCATCATTTAGGAATTGAAGATAATATTACATTGAGTACATGTCGTGATGCCTCTTTTACTGCACTAGCAAGCCAAGTTGATGAGAAGCATACTACTGATATTGCAAGTTGTTTCTTTGGCGTTCAAGGACTTCTCGGGCCTCCTGTTTCAGAATCATCCCCATTACCTGCTCCTGAGGTTTCTCCAAGTCCACTGGTTGCTGCTGATAGCCCAAGTCAACTAATGTTAGGTCTACCTTCTAAGGGAAAACACCATTCATATCACTTGACATTAGTTCCATGCATTGCTATTGCAGTTACCGCTATTGCTTTTGTGATGCTCATAGTCTTGATAGTTCTAATTCGCCAAAAGAGCAGAGAGCTAGATGAGCCTGATAACATTGGTAAACCCCATTCAAAAACCTTACCTTCTATGCCAACATGGAAATTTCAGGAAGGCTCTTCATCTATGTTTCGAAAGTTCAACTTCAAAGAGATAAAGAAAGCAACAGAGGGGTTTAGCACCGTCATTGGCCAAGGGGGATTTGGAACAGTATATAAAGCTCATTTTAGTGATGGCCAAGTTGTAGCAGTAAAGCAGATGAACAGAATCTCAGAACAGGCAGAGGAAGACTTCTGCAGGGAGATTGAGCTTCTTGCTCGGCTGCACCATCGACATCTTGTTGCATTACGAGGCTTTTGCATCAATAAACAAGAAAGGTTTCTGTTGTATGAGTACATGGGAAATGGAAGCTTAAAAGACCATCTTCATTCCCCTGGTAAAACACCATTAAGTTGGCGAACTAGAATCCAAATTGCCATTGATGTAGCTAATGCATTGGAGTACCTTCATTTCTATTGCGATCCTCCTCTGTGTCACGGAGATATCAAATCTAGCAATACATTACTGAACCAGAACTTTGTTGCTAAGATAGCTGATTTTGGCCTTGCACAAGCTTCTAAAGATGGTTCGGTATGCTTTGAACCTGTGAACACTGAAATCTGGGGAACTCCAGGTTATATGGATCCGGAATATGTTGTTACTCAAGAGCTCACTGAGAAAAGCGATATATACAGTTTTGGGGTGTTACTACTGGAAATTGTGACAGGAAGAAGAGCTATACAAGATAATAAGAATTTGGTAGAATGGGCCAAACCATACATGGAACTAGAAACTAGATTATTAGAGCTAGTAGATCCAAATGTGAGGGAATCTTTCGACATGGACCAGCTTCAAACAGTAATATCTATAGTAGGATGGTGCACACAGAGAGAAGGAAGGGCACGACCTTCAATAAAACAAGTCCTTAGGCTTCTGTACGAAACATCAGAACCAATGCACAGTGAGTTTCTACAAGCCGTTGAAGATGAGGGGAGTCAGGGAAATGAGCAGAGAGGAAGAAGAAGCAAAGGGAAAATGCTCAGAAATGAAGGAAATTTTAACAGCGGGGATGGAAGATATCTAGCTTCGTCTTCGAGTACTTCTCGGTCATATTGTAGTAGAAGTTTTTTACTAGAATCTGGGTCTCAGCTGTCATCACCAAATATAGCTTCAGTCTGA 2019 0.417 MFLYKFPSFLGLLHFLGMHLPLLMADCPLDFTASNFTLASSLCSDQGQRGKCCRYINANIAISVARFANATSNLGVPLNTSDICLQTISHTLQHYGVPQLATVFCGFGTKIRVNYECKGRTSVMQMLQSPRYVDVTKHCKVPLGRESNCKKCLNASIGYLHHLGIEDNITLSTCRDASFTALASQVDEKHTTDIASCFFGVQGLLGPPVSESSPLPAPEVSPSPLVAADSPSQLMLGLPSKGKHHSYHLTLVPCIAIAVTAIAFVMLIVLIVLIRQKSRELDEPDNIGKPHSKTLPSMPTWKFQEGSSSMFRKFNFKEIKKATEGFSTVIGQGGFGTVYKAHFSDGQVVAVKQMNRISEQAEEDFCREIELLARLHHRHLVALRGFCINKQERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHGDIKSSNTLLNQNFVAKIADFGLAQASKDGSVCFEPVNTEIWGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAKPYMELETRLLELVDPNVRESFDMDQLQTVISIVGWCTQREGRARPSIKQVLRLLYETSEPMHSEFLQAVEDEGSQGNEQRGRRSKGKMLRNEGNFNSGDGRYLASSSSTSRSYCSRSFLLESGSQLSSPNIASV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02618 672 PANTHER OS01G0750732 PROTEIN 177 614 - -
Vifa6g02618 672 Gene3D Transferase(Phosphotransferase) domain 1 400 615 - -
Vifa6g02618 672 CDD STKc_IRAK 330 592 - -
Vifa6g02618 672 MobiDBLite consensus disorder prediction 606 641 - -
Vifa6g02618 672 MobiDBLite consensus disorder prediction 613 627 - -
Vifa6g02618 672 Pfam SPARK 25 162 IPR043891 -
Vifa6g02618 672 SMART serkin_6 324 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02618 672 FunFam Putative receptor-like protein kinase 400 600 - -
Vifa6g02618 672 FunFam Putative receptor-like protein kinase 292 399 - -
Vifa6g02618 672 ProSiteProfiles Protein kinase domain profile. 324 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02618 672 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Vifa6g02618 672 SUPERFAMILY Protein kinase-like (PK-like) 304 595 IPR011009 -
Vifa6g02618 672 Pfam Protein kinase domain 328 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g02618 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Vifa6g02618 672 Gene3D Phosphorylase Kinase; domain 1 293 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02618 Vifa-Chr6 898834549 898839502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02618 19 668 Receptor kinase-like Gene Family AT3G19300 59.480 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vifa6g02618 Pkinase 5.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02618 - - gmx:100809641 1086.63