Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02617 ATGTCCGCAGACTCCTTGGAGCAGAAGGGGAAAAATATTACTGAATCGAATGCAAGCGTAATTCAATGTCCTTTAAGCCAGCAACACCGTAGCTCTTTAGATGGGCCAGTTTCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCAGAAGATGTAGCTGGTAATATAAGAATGGCTCTGCAAGTGCACCCGGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAACGCTTTCCCCAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTCATTGATGTTCCTAATGGGAGAAAAGATGCTGCTGACAAAGCAATCTTGGTTGACATGTTCTTATTTGCTCTTGACAATCCTCCACCGTCCTCTATCATGCTAATCTCCGGAGATGTTGATTTTGCTCCAGCACTCCACATTCTTGGTCAACGGGGATACACTGTAATTCTTGTCATCCCTGCTGGTGTTGGTGTTTCATCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTATTGTAGCTCGTGGAGAAGGTTTTGTCCCTCCCTCAAAGTTGTTCGCGCAGCCACGCGGAAGTTCAGTTGAGCTTGCTGGATATTTTATGGGATGCCATATCAATGATAGTGCTGACGGACAAAATGAAGAGGAAGCAATAGTTTATAGAGGGATGTCCCAGGGATATTACAACTCAAGAGAGTTTTCACTGGTATCACAATCTCTATCTGAATATAACCCACCACACATGTCTTACTTGCCAACATCTACGAGGTCGTATAGCCTTCCATCTGGATTGAATGATGTTGCTGGAGGACCTATGCCTTCTAGCGACAATACAGAAGGCCAGATATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGCCAGTTAACAAGGTTGCTCGAACTATCTGGCGGATCCCTGGCCCTGGCCCGAGTTCCAGCAGAGTACCAGAAAATTCATGGTAAGCCACTTTTTGTATCTGAATATGGAGCATTTAAGTTGGTTGATCTTTTCAAAAAAATGGATGATGCCATTTCCGTGGAAGGGAAAGGGGCTCGCAGATTTGTGTATCTCAGAAACAGGAAAGGAGGCACAAGTGCTCCTCCCCTGTCTCTTTCAAAAAAAGATAAGAAGGGAAAAGGGGCACTGGAAGAGAATGCAAATGCTGTCATCGGTGGCTGCTCTTCGGATGAGTTGTCAGATGAAGAAAGAGTAGTCATTGAAGAACATGATGGAAGAAATTTTACAGGAAAGCGTACTAAGGGGAGAGCAGCGAGATGTCAAATTGATGGCCGTGTTCTTGAGCAGTTTAAGTGCGAACTGCAGGAAATTCTGGTCAGCTATTCCTGTCGGATACTTCTAAGTTGTTTCGAGGCTGTATACAAGCAACGATACAAGAAACAGTTGGATTATCAGCAATTTGGTGTGGACAAGTTGGAGGATTTGTTGGAGAAAGTGAGTGATGTGGTAGTAATGCACGAGGAACCGATATATACCGTCTTTCAAGCATGA 1545 0.446 MSADSLEQKGKNITESNASVIQCPLSQQHRSSLDGPVSILWDIENCPVPSDVRPEDVAGNIRMALQVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPIVARGEGFVPPSKLFAQPRGSSVELAGYFMGCHINDSADGQNEEEAIVYRGMSQGYYNSREFSLVSQSLSEYNPPHMSYLPTSTRSYSLPSGLNDVAGGPMPSSDNTEGQIWVQPGDLNGLKGQLTRLLELSGGSLALARVPAEYQKIHGKPLFVSEYGAFKLVDLFKKMDDAISVEGKGARRFVYLRNRKGGTSAPPLSLSKKDKKGKGALEENANAVIGGCSSDELSDEERVVIEEHDGRNFTGKRTKGRAARCQIDGRVLEQFKCELQEILVSYSCRILLSCFEAVYKQRYKKQLDYQQFGVDKLEDLLEKVSDVVVMHEEPIYTVFQA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02617 514 CDD PIN_limkain_b1_N_like 36 162 - -
Vifa6g02617 514 ProSiteProfiles OST-type HTH domain profile. 299 371 IPR025605 -
Vifa6g02617 514 Gene3D - 36 181 - -
Vifa6g02617 514 Pfam OST-HTH/LOTUS domain 444 507 IPR025605 -
Vifa6g02617 514 Pfam OST-HTH/LOTUS domain 301 366 IPR025605 -
Vifa6g02617 514 Gene3D - 299 368 IPR041966 -
Vifa6g02617 514 Gene3D - 441 512 IPR041966 -
Vifa6g02617 514 CDD LOTUS 300 369 - -
Vifa6g02617 514 Pfam NYN domain 37 176 IPR021139 GO:0004540
Vifa6g02617 514 CDD LOTUS 445 507 - -
Vifa6g02617 514 ProSiteProfiles OST-type HTH domain profile. 444 514 IPR025605 -
Vifa6g02617 514 PANTHER LIMKAIN B LKAP 21 483 IPR024768 GO:0005777|GO:0010468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02617 33 187 C2H2 Transcription Factor Family AT5G61190 42.581 1.82e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02617 - - gmx:100818186 818.92