Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g02588 ATGGCTCAACAAACTAGCACTGGAGATCTGAATCAGAACCCGAGCCAGACTCCGAACCAGAACCAGAACCAGCCACAGCAGTGGGCCCAGCCGCATCAGTATCAGCAGCAATGGATGTCCATGCAATATCCTGCTACTGCTATGGCTATGATGCAGCAGCAGATGATGATGTATCCACAGCATTACATGTCGTATGTTCATCCTCATCATTATCAGCCGCCTCACCAGCAGCAACCCTCGCCGCCGCCGACTACTCAGCCTCATCATGCTCATGCTCATCATCCTCATTATCACCAGCAGCAGCATCAGCACAAACAGCTTTCTCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGACGAGACTTTTCTTCATAACTGCTTTGCTCATACCGGCGAGGTTGTATCGGCCAAGGTCATACGTAATAAGCAAACTGGTGTCTCGGAGGGATATGGATTTGTCGAATTCTATTCGCGAGGAACGGCTGAGAAAGTCTTGCAAAACTTTAATGGTGCTATGATGCCAAACACAGATCAGGCGTTTCGTTTGAATTGGGCTACATTCAGCGCTGGCGGCGGTGGTGGTGGTGAAAGGCGTTCTTCTGAGGCTACTTCTGATCTCTCTGTTTTTGTGGGAGATTTAGCCATAGATGTTACTGATGCTATGCTGCAGGAGGTGTTTGCTAGCAGATTCTCATCTATTAAGGGAGCTAAAGTTGTCATTGATTCTAATACTGGTCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAGAATGAAAGGACAAGGGCAATGACTGAAATGAACGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTCGGTGTTGCAACACCCAAAAAAACTTACGGCAATCCACAACAATATTCTTCACAAGCTGTAGTGTTGGCTGGCGGTGGTCACTCGTCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAGCGATGAGGATCTCAGACAACCCTTTTTGCAATATGGCGACGTTGTCTCCGTGAAAATTCCAATCGGTAAAGGATGTGGCTTTGTTCAACTTGCTGACAGAAAGAATGCTGAGGATGCTATTCAGGGATTGAATGGAACAGTGATTGGGAAGCAGACCGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGAACAATGACTCGAATGGAAACCATTACGGTGGACAGGGTTATGGTGGCCACGGATACGGAGGCCATGGTTATGCTGCTAGACAGAATCAGGATATAGCAATGCAACAACCTGCTGCTGCAATTCAAGGGGCTTCATAA 1371 0.4741 MAQQTSTGDLNQNPSQTPNQNQNQPQQWAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMSYVHPHHYQPPHQQQPSPPPTTQPHHAHAHHPHYHQQQHQHKQLSPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGVSEGYGFVEFYSRGTAEKVLQNFNGAMMPNTDQAFRLNWATFSAGGGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQEVFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGHSSNGAVAQGSQSEGDSNNTTIFVGGLDSEISDEDLRQPFLQYGDVVSVKIPIGKGCGFVQLADRKNAEDAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNNDSNGNHYGGQGYGGHGYGGHGYAARQNQDIAMQQPAAAIQGAS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g02588 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 291 IPR000504 GO:0003723
Vifa6g02588 456 SMART rrm1_1 213 287 IPR000504 GO:0003723
Vifa6g02588 456 SMART rrm1_1 114 189 IPR000504 GO:0003723
Vifa6g02588 456 SMART rrm1_1 333 400 IPR000504 GO:0003723
Vifa6g02588 456 MobiDBLite consensus disorder prediction 68 108 - -
Vifa6g02588 456 FunFam Polyadenylate-binding protein RBP47B 199 302 - -
Vifa6g02588 456 Gene3D - 312 441 IPR012677 -
Vifa6g02588 456 CDD RRM2_SECp43_like 211 290 - -
Vifa6g02588 456 FunFam Polyadenylate-binding protein RBP47B 112 192 - -
Vifa6g02588 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 193 IPR000504 GO:0003723
Vifa6g02588 456 SUPERFAMILY RNA-binding domain, RBD 76 194 IPR035979 GO:0003676
Vifa6g02588 456 FunFam Polyadenylate-binding protein RBP47 314 436 - -
Vifa6g02588 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 332 404 IPR000504 GO:0003723
Vifa6g02588 456 MobiDBLite consensus disorder prediction 74 88 - -
Vifa6g02588 456 Gene3D - 201 304 IPR012677 -
Vifa6g02588 456 Gene3D - 112 192 IPR012677 -
Vifa6g02588 456 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 99 408 - -
Vifa6g02588 456 MobiDBLite consensus disorder prediction 1 33 - -
Vifa6g02588 456 CDD RRM1_SECp43_like 114 194 - -
Vifa6g02588 456 SUPERFAMILY RNA-binding domain, RBD 211 316 IPR035979 GO:0003676
Vifa6g02588 456 SUPERFAMILY RNA-binding domain, RBD 323 434 IPR035979 GO:0003676
Vifa6g02588 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 334 397 IPR000504 GO:0003723
Vifa6g02588 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 182 IPR000504 GO:0003723
Vifa6g02588 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 283 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g02588 Vifa-Chr6 890852712 890855815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g02588 115 411 Eukaryotic Initiation Factors Gene Family AT4G34110 29.605 2.51e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g02588 - - psat:127100806 722.62